Plant FIBer expression Database

Lus10014936 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09713 A_thal_3526 Plant protein 1589 of unknown function (A_thal_3526)
Representative CDS sequence
>Lus10014936 pacid=23152833 polypeptide=Lus10014936 locus=Lus10014936.g ID=Lus10014936.BGIv1.0 annot-version=v1.0
ATGGAGTCCACTTTCGAAGTAAACTTAGCAGCATTAGAAGGGGTGCATAGTTTGATCACTATATGCATGGTGGTCCGAATGAACAAAACGCAGACGGCGG
AGTTCATCTTCAAGAACGACAATATTGCCGCCGAGATCGCAAAAAGAGCTGATGAATGCGGTCGCCAAACTCATTTTGTTGGTAGAAAGATACAAGTAAA
AGATTTTACAAAGGCTACAGAGGAAGAACTCAGAATTATCACCGAATTGATTCGAGCTTGCATGACAACTTGCATGACCGAGACTCAAACTGCTGACTAC
CTCTCTAGCTTTGCACTAATCGATCCACAGTTTACCAAAGCAGCATGGGAGAAGATGATGCGGGGATCGGATATGGAGTTTTGCGAGTTCTACCAACTAT
TGCTACGGATGTACCAATCAAATGCCCAACTCAAAACTAGAGTGAGCAATAATCGTATATTGCTTAGACCCTATTTTCGATATCAGCTTGCTCGATGGTT
TGAGCTGCAGCAGAATGCACCAACCTCCTCTGCATCAACATCGACATCGAACTCTGCATCGACATCGACCTCTGAGGCAACAGAGCAGCAGCGATGGGGT
GAGTTGTTCTTCAAATTCTGGGAAGCCCGCACAGACCTACTAGCAACACAGGGATCGAAAGATGTTTCGGAGGACGACTTGAATAGCTTGATCTCAACTT
TGTTGCAATCTGAGTCCGAGGGAGATGGAGATGTTGAGTCCGAGGGAGAAGGAGATGACCCTGAAGTGAAATATTACTTCAATTTTGATACATACTACGC
TAATGACAACGATGCACCACCACAGTAG
AA sequence
>Lus10014936 pacid=23152833 polypeptide=Lus10014936 locus=Lus10014936.g ID=Lus10014936.BGIv1.0 annot-version=v1.0
MESTFEVNLAALEGVHSLITICMVVRMNKTQTAEFIFKNDNIAAEIAKRADECGRQTHFVGRKIQVKDFTKATEEELRIITELIRACMTTCMTETQTADY
LSSFALIDPQFTKAAWEKMMRGSDMEFCEFYQLLLRMYQSNAQLKTRVSNNRILLRPYFRYQLARWFELQQNAPTSSASTSTSNSASTSTSEATEQQRWG
ELFFKFWEARTDLLATQGSKDVSEDDLNSLISTLLQSESEGDGDVESEGEGDDPEVKYYFNFDTYYANDNDAPPQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014936
[exp]
0 1
AT3G26040 HXXXD-type acyl-transferase fa... Lus10004441
[exp]
9.9 0.8526
AT5G55050 GDSL-like Lipase/Acylhydrolase... Lus10023979
[exp]
25.1 0.7628
AT1G75660 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) Lus10013326
[exp]
26.6 0.8237
AT3G26300 CYP71B34 "cytochrome P450, family 71, s... Lus10031674
[exp]
42.0 0.7799
AT3G26040 HXXXD-type acyl-transferase fa... Lus10001107
[exp]
48.8 0.7874
AT4G35160 O-methyltransferase family pro... Lus10023986
[exp]
65.6 0.7937
AT3G26040 HXXXD-type acyl-transferase fa... Lus10000319
[exp]
81.6 0.7317
AT3G23240 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1... Lus10033885
[exp]
87.3 0.7680
AT4G36380 ROT3 ROTUNDIFOLIA 3, Cytochrome P45... Lus10041794
[exp]
96.3 0.7802
AT5G51780 bHLH bHLH036 basic helix-loop-helix (bHLH) ... Lus10027394
[exp]
102.2 0.7702

Lus10014936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.