Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 62 / 1e-10 F-box family protein (.1) AT2G17830 50 / 8e-07 F-box and associated interaction domains-containing protein (.1) AT3G25460 49 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT1G50870 47 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT3G23880 45 / 5e-05 F-box and associated interaction domains-containing protein (.1) AT2G16810 44 / 7e-05 F-box and associated interaction domains-containing protein (.1) AT4G04690 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT3G21410 44 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT3G17480 43 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT3G19560 43 / 0.0002 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014935 [exp] 317 / 9e-107 AT3G06240 84 / 2e-17 F-box family protein (.1) Lus10018008 [exp] 163 / 5e-47 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10009424 [exp] 97 / 1e-22 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10028961 [exp] 96 / 6e-22 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023372 [exp] 82 / 5e-17 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10027824 [exp] 79 / 3e-16 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10015408 [exp] 73 / 3e-14 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10029725 [exp] 71 / 2e-13 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10018095 [exp] 61 / 3e-10 ND 49 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G318400 [exp] 71 / 2e-13 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058000 [exp] 70 / 3e-13 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G318300 [exp] 68 / 1e-12 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.001G458400 [exp] 57 / 8e-09 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 52 / 2e-07 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.018G007900 [exp] 51 / 4e-07 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 50 / 9e-07 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.011G121200 [exp] 50 / 1e-06 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.005G114900 [exp] 48 / 5e-06 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.006G012900 [exp] 47 / 7e-06 AT4G12560 144 / 2e-39 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014937 pacid=23152757 polypeptide=Lus10014937 locus=Lus10014937.g ID=Lus10014937.BGIv1.0 annot-version=v1.0 ATGGACCAGCGGCAACGTCAACGTCGTCGGCGACGTGATAATTACTACCTCCCGCAAGACCTCATCGCCGACATCTTGCTAAGGCTCCCCACCGCCGCCG CCACCGTCAGGTTCTGCTGCGTTTGCAAATCATGGAGCCGACTGCTCTCCGACGGTAAGTTTATCTACCGCCATCTGTTTTCTGACGACGACGGTGAATG CAAACCTAATCAATCAGTTATGATCATGCAAAACTGGCGCAATGATTCGGCATTGGCAAGCCTTTTATATTACTCTTTGCTCTCCCACGACACTCTCCTC CCCAAAACGACACCGTATGACAACCGCGAAGGGCCAACAATTTTTTTGTTCCCGATTGCCGCTTTGAAATCGTTGGCTGCTGCAACGGCTTGTTCTGCAT TGCCGATAGCTCCTGGGGGGGTGGAAACTCAGCTGATTCTTTGGAACCCCTCAACTTTAGATACTAAGCTCTTGCCCGAGTCGATCAATGGTTTTTTGTT TGACTGGGAGCAGATCGGTTTTGGGTTCGATTCGAGGACAGGAGACTATAAAGTTGTGAAAATTTCTAACTCAATGTCTCCTTGTACCATTGAGGTTTAT AGCTTGAAGAATGATTCGTGGAGTGCAATCTTAGTCAACGTAAAAGAGCACAATATTGGGCGACAAAATTGTTTCAACGAGTTTGCTACGATGCATAATA ATAATAAATCATCGAGTTATGAAAAAATCTATTGGTACAATGCTTACATGATTAACAACTACATTACTTGCTTTGACATTAGGGAGGAAAGATTTAGCCA TCAGATTTTTCCGGCTGGCCTTACCGAAAGAGCTGTTCATGTTCGTAAGTCTGAGTGCCTTGAGTTAGTTACTTCATTTAGCAACCACGTCCAAGGAAGA CTCTCTGGTGGTTGTATTTCAATTGAACAACAACAAGGATAA
AA sequence Show only first row Show all	>Lus10014937 pacid=23152757 polypeptide=Lus10014937 locus=Lus10014937.g ID=Lus10014937.BGIv1.0 annot-version=v1.0 MDQRQRQRRRRRDNYYLPQDLIADILLRLPTAAATVRFCCVCKSWSRLLSDGKFIYRHLFSDDDGECKPNQSVMIMQNWRNDSALASLLYYSLLSHDTLL PKTTPYDNREGPTIFLFPIAALKSLAAATACSALPIAPGGVETQLILWNPSTLDTKLLPESINGFLFDWEQIGFGFDSRTGDYKVVKISNSMSPCTIEVY SLKNDSWSAILVNVKEHNIGRQNCFNEFATMHNNNKSSSYEKIYWYNAYMINNYITCFDIREERFSHQIFPAGLTERAVHVRKSECLELVTSFSNHVQGR LSGGCISIEQQQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10014937 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	4.7	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	6.6	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	8.1	1.0000
					Lus10011636 [exp]	9.4	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	10.5	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	11.5	1.0000
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	11.8	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	12.4	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	13.3	1.0000
					Lus10007546 [exp]	13.5	1.0000

Compare expression of checked genes

Lus10014937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.