Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53210 142 / 5e-40 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 104 / 2e-27 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 99 / 1e-23 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 96 / 3e-23 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 96 / 4e-23 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 91 / 3e-21 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 90 / 5e-21 bHLH bHLH071 beta HLH protein 71 (.1) AT2G46810 88 / 7e-20 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 86 / 2e-19 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G65320 74 / 4e-15 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038823 [exp] 330 / 2e-106 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10001066 [exp] 234 / 5e-76 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039328 [exp] 130 / 1e-35 AT5G53210 257 / 3e-83 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 104 / 1e-25 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 99 / 3e-25 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 102 / 8e-25 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034031 [exp] 99 / 1e-24 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 96 / 1e-23 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 94 / 2e-23 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031800 [exp] 245 / 4e-80 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G022300 [exp] 211 / 5e-67 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G202900 [exp] 182 / 1e-57 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 100 / 2e-24 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 99 / 9e-24 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 96 / 2e-23 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.002G101900 [exp] 91 / 2e-21 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 91 / 4e-21 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 91 / 6e-21 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 90 / 6e-21 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014938 pacid=23152824 polypeptide=Lus10014938 locus=Lus10014938.g ID=Lus10014938.BGIv1.0 annot-version=v1.0 ATGTCGCATATAACGGTGGAGAGGAACCGGCGGAAGCAGATGAACGAGCATTTGGGTGTGTTGAGGTCCCTAATGCCTTCCTTCTATGTCAAACGAGGAG ACCAAGCCTCCATAATAGGAGGAGTAGTTGACTACATCAACGAACTACAACAAATCCTCGGATCCCTCGAAGCCAAAAAGCAACGAAAGCTCTACAATAC CGATGTCTTAAGCCCTCGACTGGCCACCGTCGCTAATAGTCCTAGGTCGTCGCAACTAATAAGCCCTAGAAAACCGCCTCTGAGTCCTAGACCACCTCCC ACGATCATCAACTTACCGCCCATAAGCCCACGAACCCCTCAAACTCATCAGCCACCTAGCCCGTTCATTAATATTATTCCTACCACCACCAGAACAGCGT CGTTTCTACCCTCCCCAATGGGGTCTTCTAATTCATCCTCGAATATCATGATGATTAACAGCGACATAGTTAGTTGTAACAACAACAATAACAACAATGA TGTAGTGGCTAATGGTAAGTCGCCCATTGCTGATGTTGAGGTAAAGTTTTCAGGGCCAAATCTAGTTCTGAAGACTGTGTCTCCGAGGATTCCTGGTCAG GCTGTGAAGATCATTGCGGCTCTTGAGGACTTGTCGCTCGAGATCCTGCATGTTAATGTGGACACCGTGGAGGAAAGCTTGCTTGTTAACTCCTTCACTA TCAAGATTGGAATTGAATGCCAACTAAGCGCAGAGGAGCTTGCGCAACAAATCCAGCAAACATTCTGCTAA
AA sequence Show only first row Show all	>Lus10014938 pacid=23152824 polypeptide=Lus10014938 locus=Lus10014938.g ID=Lus10014938.BGIv1.0 annot-version=v1.0 MSHITVERNRRKQMNEHLGVLRSLMPSFYVKRGDQASIIGGVVDYINELQQILGSLEAKKQRKLYNTDVLSPRLATVANSPRSSQLISPRKPPLSPRPPP TIINLPPISPRTPQTHQPPSPFINIIPTTTRTASFLPSPMGSSNSSSNIMMINSDIVSCNNNNNNNDVVANGKSPIADVEVKFSGPNLVLKTVSPRIPGQ AVKIIAALEDLSLEILHVNVDTVEESLLVNSFTIKIGIECQLSAEELAQQIQQTFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	0	1
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10035583 [exp]	1.0	0.9749
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	2.8	0.9635
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	3.0	0.9592
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	3.5	0.9450
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	8.7	0.9382
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	10.4	0.9287
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	11.5	0.9364
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10034370 [exp]	19.8	0.9310
AT4G33800			unknown protein		Lus10006135 [exp]	20.8	0.9308
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Lus10000202 [exp]	24.1	0.8405

Compare expression of checked genes

Lus10014938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.