Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41480 503 / 1e-174 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) AT3G55630 112 / 3e-26 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT5G05980 111 / 6e-26 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G10160 98 / 2e-21 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038824 [exp] 936 / 0 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10030161 [exp] 103 / 4e-23 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10040261 [exp] 103 / 4e-23 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 101 / 1e-22 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 75 / 6e-14 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022400 [exp] 623 / 0 AT5G41480 570 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Potri.006G045400 [exp] 116 / 2e-27 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.008G060600 [exp] 113 / 1e-26 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 112 / 5e-26 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.016G041800 [exp] 108 / 9e-25 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [flax] [poplar] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Lus10014939 pacid=23152787 polypeptide=Lus10014939 locus=Lus10014939.g ID=Lus10014939.BGIv1.0 annot-version=v1.0 ATGAGATTTTTAAATCGTTTTGTCTCCGATGTCTTCGATTTACCGATCGGAATCCGAGCTAGAATCCAACCCAACTGCGGATTCGATTCAAGCTCGAAGA TGTTACAAATCTCCAAGCGGTTCTTCTCCATTTCCACTGATGAGACGGAGCTGAAGGACTTCACAGATTATCTCGATTCTCTCACTAACTACGAGAGATC GGGAGTTCCGAAGGACGCCGGTACTGATTCCGACGACGGACTCGATCTGGGTAGGATGCGGCGGCTCATGAATCGCCTTGGTGATCCCCAATCCAAGTTC AAGGCTGTTCATATTGCTGGAACTAAAGGGAAAGGGTCTACTGCTGCTTTTGTTTCCAATATTTTGAGAGCTGAAGGCTATTCAGTTGGTTGCTATACCA GTCCACACATTATGAGTATAAGGGAGAGGATGACAGCAGGGAAGTCTGGTGATCCAGTGTCTGCAAAGTCTCTGGATCGTCTTTTTCGTAAGATAAAGGG GCAACTCGATGAAGCTGTTCATCTCGAAAACGGACGTCTGACTCATTTCGAGATTCTTACAGCTACTGCATTTGCCTTATTCGCCGAGGAGAATGCAGAA ATTGCAGTAATTGAGGCTGGGCTTGGAGGTGCTCGAGATGCAACAAACATCCTATCGAGTTCTGACCTTGCTGCTTCAGTTATAACCACGATCGGCGAAG AGCATCTAGCTGCCCTTGGAGGTTCGCTCAAGAGCATTGCAATGGCAAAGGCAGGAATCATAAAACACGGCCGTCCAACTGTGATTGGTGGCCCTTTCCT ACCACACATAGAGCAGATAATTCGCGATAGAGCCGCAATGATGAGCTCCCCAGTAGTATCAGCGTGTGATGCTGGGATCAGGGCCACCATTAAAGGACTT GGTGTGAACGACATCAAGATACAAGTTCAGCAGCAGGGTTTTGACCTGTCTCTTGAGCTATCAGACTTCAAATTGCAAATGCTCGGAAAGCACCAACTTC AAAATGCTGTAACTGCTGCATGCACCGCCCTTTGCCTCCGTAACCAAGGATGGAAAGTCTCGGATAAATCGATCCGTGCTGGTCTCGAGAGTACACACTT ACTCGGAAGAAGTCAGTTTCTATCATCGAACGAAGCTGAGGCGTTAGGATTACGTGGAGTAACAATACTTGTCGATGGAGCTCATACCAAAGAATCGGCC AAGTCGTTGGTGGACACGATACAGATGGCCTTCCCCAATGCAGAACTAGCCTTCGTGGTCGCAATGGCCAGCGACAAGAACCATCTAGCATTCGCCAGAG AAATTCTATCAGCTAGAAGATTGGTTGCAGTGTTCCTAACGGAAGCCGAGATAGCCGGAGGAAAGTCACGAACGACATCGGCTGACTGGCTGAGAGACCA ATGGGTTCGAGCCTGCAAGGAAGTGGGAAGTTCGACTCTTTTGGTGGCCGAGGGATCGATTCGAGCTGCAGTTCGAGCTGCCGCAGAAATTCTCGAAAGA AGGAGAACAAGTGAAGGGAACGGCAGGGCTGGTGTTGTTGTGGTCACTGGGTCTCTTCATGCTGTCTCATCTGTACTTTGTTCTAATTAA
AA sequence Show only first row Show all	>Lus10014939 pacid=23152787 polypeptide=Lus10014939 locus=Lus10014939.g ID=Lus10014939.BGIv1.0 annot-version=v1.0 MRFLNRFVSDVFDLPIGIRARIQPNCGFDSSSKMLQISKRFFSISTDETELKDFTDYLDSLTNYERSGVPKDAGTDSDDGLDLGRMRRLMNRLGDPQSKF KAVHIAGTKGKGSTAAFVSNILRAEGYSVGCYTSPHIMSIRERMTAGKSGDPVSAKSLDRLFRKIKGQLDEAVHLENGRLTHFEILTATAFALFAEENAE IAVIEAGLGGARDATNILSSSDLAASVITTIGEEHLAALGGSLKSIAMAKAGIIKHGRPTVIGGPFLPHIEQIIRDRAAMMSSPVVSACDAGIRATIKGL GVNDIKIQVQQQGFDLSLELSDFKLQMLGKHQLQNAVTAACTALCLRNQGWKVSDKSIRAGLESTHLLGRSQFLSSNEAEALGLRGVTILVDGAHTKESA KSLVDTIQMAFPNAELAFVVAMASDKNHLAFAREILSARRLVAVFLTEAEIAGGKSRTTSADWLRDQWVRACKEVGSSTLLVAEGSIRAAVRAAAEILER RRTSEGNGRAGVVVVTGSLHAVSSVLCSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	0	1
AT3G28760			unknown protein		Lus10005250 [exp]	1.4	0.9180
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	2.0	0.9109
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	3.0	0.9088
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	3.7	0.8902
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	4.9	0.8890
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	5.7	0.8820
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	6.5	0.8928
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	7.5	0.9011
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	7.9	0.8593
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	9.7	0.8943

Compare expression of checked genes

Lus10014939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.