Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27940 485 / 3e-171 ATMTM1 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) AT2G46320 390 / 6e-135 Mitochondrial substrate carrier family protein (.1.2.3) AT4G26180 86 / 2e-18 Mitochondrial substrate carrier family protein (.1) AT1G14560 74 / 3e-14 Mitochondrial substrate carrier family protein (.1) AT3G53940 71 / 2e-13 Mitochondrial substrate carrier family protein (.1) AT5G56450 69 / 1e-12 PM-ANT Mitochondrial substrate carrier family protein (.1) AT5G48970 67 / 6e-12 Mitochondrial substrate carrier family protein (.1) AT2G37890 64 / 4e-11 Mitochondrial substrate carrier family protein (.1) AT3G55640 64 / 6e-11 Mitochondrial substrate carrier family protein (.1) AT3G21390 63 / 1e-10 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038825 [exp] 739 / 0 AT4G27940 538 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Lus10012635 [exp] 377 / 4e-129 AT2G46320 436 / 3e-153 Mitochondrial substrate carrier family protein (.1.2.3) Lus10032690 [exp] 80 / 3e-16 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 79 / 4e-16 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10013527 [exp] 77 / 3e-15 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10013518 [exp] 68 / 2e-12 AT5G56450 485 / 8e-174 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 66 / 8e-12 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 64 / 6e-11 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 64 / 8e-11 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032100 [exp] 541 / 0 AT4G27940 522 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.015G022700 [exp] 541 / 0 AT4G27940 514 / 0.0 ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, manganese tracking factor for mitochondrial SOD2 (.1) Potri.002G167700 [exp] 402 / 5e-139 AT2G46320 424 / 3e-148 Mitochondrial substrate carrier family protein (.1.2.3) Potri.006G153600 [exp] 80 / 2e-16 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 79 / 4e-16 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.008G210000 [exp] 71 / 3e-13 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 68 / 3e-12 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 65 / 2e-11 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 64 / 3e-11 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 64 / 4e-11 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10014940 pacid=23152797 polypeptide=Lus10014940 locus=Lus10014940.g ID=Lus10014940.BGIv1.0 annot-version=v1.0 ATGGCCGAACAAGGGGATCAATGGGTGATGAGATCGGAGCCGGTCTCTATCCGAGCGTTGGAGATGGTTGACGAGCAATTGGTCGTCGTCGACGGCGAGC GGCGGAGCTGCTCCGATCAGCAACGGGTTAAAGAATCAGGGGACGGGAGTTTAGGGCTTGGCGAGAGAGCTCTCTCTGCTGCCGGTGCGGCTTTCCTTTC GGCTATTATCGTTAACCCTCTCGACGTTGTCAAGACGAGGCTGCAAGCTCAAGCTGCAGGAGTTGCTTACTCACATCCGCTTAGTAATGTGATAAATCGG ATGGCATACTTTGGCCCAACCATGTTGTTTGCTGATCTTAGATGCTCACCATCTTGTGCACGAGCTGGACTTCACGGGACGGTATCTATGTGTCCTCCGG ATTGTTTTCAATACAAGGGGACTCTCGACGTTTTCGGCAAGATCATACGACAGGAAGGATTTGGGAGGTTGTGGAGGGGCACGAATGCTGCTCTTGCGCT GGCTGTCCCAACTGTGGGAATCTATTTACCATTATATGATGTATTCCGAATCTGGCTTGAGGAAAAAGCCTCTGAGAATCTTCCCAGTGCCACACCATAC GTCCCCTTGGTCGCTGGCTCTCTAGCACGCTCATTAGCTTGTATTACTTGCTATCCGGTCGAACTTGCTAGAACTCGCATGCAGGCATTCAAGGCTGCCC AAAACGGTACAAAAGCTCCAGGAGTATGCAAAACTCTACTTGAGGTCCTTTCTCATGTTCGAACCGCAGATATCGCTCAAAATAAATGGAGAGACTACCG GGTACTATGGACGGGCATGGGAGCACAGCTTGCTCGAGATGTCCCTTTCTCTGGAATTTGTTGGGCACTACTTGAGCCTACGAGGAGACGGCTTCTTGGT CTTGTCGGTGAGGACTCAAACGTAGCTACTATACTCGGAGCCAACTTCTCGGCTGGGTTTATGGCGGGAAGCGTTGCAGCAGCTGCCACGTGTCCCCTCG ATGTTGCCAAAACTCGAAGGCAGATAGAGAAGGATCACGCAAGAGCAGTAAGGATGACAACCCGGCACACACTGATGGAAGTTTGGAAGGATGGAGGTAT GAGGACGCTGTTCACAGGAGTCGGTGCTCGGGTTGGTCGAGTGGGTCCCTCTGTAGGCATTGTGGTCTCTTTCTACGAAGTTGTGAAGTACGCATTGCAT TCTCGCTACGATTCCTCGTAG
AA sequence Show only first row Show all	>Lus10014940 pacid=23152797 polypeptide=Lus10014940 locus=Lus10014940.g ID=Lus10014940.BGIv1.0 annot-version=v1.0 MAEQGDQWVMRSEPVSIRALEMVDEQLVVVDGERRSCSDQQRVKESGDGSLGLGERALSAAGAAFLSAIIVNPLDVVKTRLQAQAAGVAYSHPLSNVINR MAYFGPTMLFADLRCSPSCARAGLHGTVSMCPPDCFQYKGTLDVFGKIIRQEGFGRLWRGTNAALALAVPTVGIYLPLYDVFRIWLEEKASENLPSATPY VPLVAGSLARSLACITCYPVELARTRMQAFKAAQNGTKAPGVCKTLLEVLSHVRTADIAQNKWRDYRVLWTGMGAQLARDVPFSGICWALLEPTRRRLLG LVGEDSNVATILGANFSAGFMAGSVAAAATCPLDVAKTRRQIEKDHARAVRMTTRHTLMEVWKDGGMRTLFTGVGARVGRVGPSVGIVVSFYEVVKYALH SRYDSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10014940 [exp]	0	1
AT3G62820			Plant invertase/pectin methyle...		Lus10007873 [exp]	2.8	0.8065
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004396 [exp]	4.2	0.8144
AT4G15248	CO		B-box type zinc finger family ...		Lus10015097 [exp]	9.9	0.8342
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	11.0	0.7760
AT5G07330			unknown protein		Lus10018040 [exp]	13.3	0.8140
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Lus10020815 [exp]	19.1	0.8011
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10003380 [exp]	21.9	0.7882
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	25.6	0.8021
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	30.1	0.7920
AT3G57990			unknown protein		Lus10012013 [exp]	30.6	0.7472

Compare expression of checked genes

Lus10014940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.