Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039324 [exp] 60 / 6e-11 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10027573 [exp] 57 / 5e-10 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014941 pacid=23152718 polypeptide=Lus10014941 locus=Lus10014941.g ID=Lus10014941.BGIv1.0 annot-version=v1.0 ATGTACCCGAACATATCAGATGAAGGTGGGCATGGCAGCAGAAGGAACCAATCGAGTGAAGATTTATGCGAGCTGGGTAAGCTCGTCGATGAGCCGGAGC CGTTGGATTTGATTTTAACCGAGCCGGAGCCGTTGGATCTGTTTTTAGCCGAGCCGGAGCCGATTCGGGAAGGTAGAGTGACAGCTGGACTCCAACTCCT CGAGGAGTGTGAAGAATCAGAAACCGAAACCGAACAAGAAATCAATCACAACTCAGTCTCCGCCGGTGTCTTCGACGACTGTGATCCGCAGCCGTTTTGG AAGGAAACGTCGTCGTTTATCACCGACGATTTTTTCGAATTCGACTACCCTCCGGAGATTTTCGACGCCGGTGACGTGGCCAGCGGCACCGCACTATTGC AAGAGAGCTTCTCCGGCGGGGACATCTTTCAGGACGTACCCACAGACGTCGGGTCCGGTGAGGACTTTTTCCAAGATATTGGAGACTTGTTCTTCTCGGA ACCTTTGGTGGGGCTTTGA
AA sequence Show only first row Show all	>Lus10014941 pacid=23152718 polypeptide=Lus10014941 locus=Lus10014941.g ID=Lus10014941.BGIv1.0 annot-version=v1.0 MYPNISDEGGHGSRRNQSSEDLCELGKLVDEPEPLDLILTEPEPLDLFLAEPEPIREGRVTAGLQLLEECEESETETEQEINHNSVSAGVFDDCDPQPFW KETSSFITDDFFEFDYPPEIFDAGDVASGTALLQESFSGGDIFQDVPTDVGSGEDFFQDIGDLFFSEPLVGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014941 [exp]	0	1
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040707 [exp]	6.3	0.8011
					Lus10018215 [exp]	8.2	0.8109
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	11.1	0.8058
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10018304 [exp]	13.1	0.8031
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10040708 [exp]	14.3	0.7815
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10037228 [exp]	16.9	0.7496
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10026054 [exp]	23.2	0.7642
AT1G31240			Bromodomain transcription fact...		Lus10040612 [exp]	24.7	0.6480
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031271 [exp]	25.9	0.7776
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10034025 [exp]	27.2	0.7963

Compare expression of checked genes

Lus10014941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.