Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 610 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 558 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 555 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 539 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 537 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 507 / 4e-173 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 485 / 2e-164 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 442 / 1e-147 RKL1 receptor-like kinase 1 (.1) AT3G17840 423 / 3e-140 RLK902 receptor-like kinase 902 (.1) AT3G02880 408 / 1e-134 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038828 [exp] 1070 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 776 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 757 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 658 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 575 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 574 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 567 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 567 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 562 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033200 [exp] 743 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 733 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 687 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 684 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 566 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 560 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 555 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 542 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 521 / 3e-178 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 448 / 2e-150 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014943 pacid=23152805 polypeptide=Lus10014943 locus=Lus10014943.g ID=Lus10014943.BGIv1.0 annot-version=v1.0 ATGGAAACCAAAAAAGCTCAATTCATTCCCTATGCAATATTCCTCTTCACTATAACAGTTTATTCACTCCACACCACAGCAGACCCGACCGAAGACAAAC AAGCCTTACTAGAATTCAAACGCAGGATTACTCACATTTCCCACATCCTCAACTGGGAAAAGACTTCCCCTGTATGCACGAAATGGACCGGCGTAACATG CAACCACGACGAATCTCGAGTCGTGGCACTACGACTCCCTGGGATGGGGATTCGCGGTCCAGTCCCTCCCAACACTCTGAGCAGGCTGTCGGCTGTTCAG ATCCTGAGCCTCAGGTCGAACGGGATATCAGGGGATTTTCCTGATGACTTCTTCAGGCTTGGGAACCTGACGAGTCTTTATCTTCAGGGGAATCGATTTA CGGGATCGTTGCCTTCAGATTTCGGAGCTTGGAAGCAGAGTCTGAGTGTTCTTGATCTATCTGGAAATGGTTTTGATGGAAGTATTCCGAATTCGGTGTC AAATTTGACTCATTTGACGTCGTTGAATCTTGCCGGCAATGCTCTTTCAGGTGAAATTCCTGACATAAGTGTTCCTAGTCTACAGAGTCTGAACCTGACC AATAACCATCTCACAGGGACCGTTCCTCGGTCCCTGATGTTGCGGTATCCAACCTCCGCATTCTCCGGCAACAATCTCTCCTTACAACCAGCACTTCCTC CGGCTATTCCAATCGAACCACCAAACCCTCAGCCTTCAACCGAGAATAATAACAACAAGAAGCTAAGCGAACAAGCAATCTTGGGGATCGTGCTAGGAAC CTGCGTGGTGGGGTTCTTCACTGTCGCGATTTTGATGATATGTTGCTACTCGAAGAAAAAAGCCAAGAAGGATACAAAATTGCCAACGAGTTCAAATTCG AACAAGAAGAAGAAGAAAGAGGACCACCTTTCGAAGAATGATTCGGATGATCACAGGCTCGTGTTCTTCGAAGGGTGTAGTCTAGCATTCGACTTGGAAG ACTTGCTGAGGGCGTCGGCAGAAGTGATGGGAAAGGGAACTTACGGGACGACTTATAAGGCCGCGTTGGAGGATGCGCGGACGGTGGCGGTTAAGAGGCT GAAGGAAGTGACGGTTGCTCGAAAGGATTTCGAGAATCGGATGGAGGTTGTTGGGAGGATTAAGCACGAGAATGTGTGTGCACTTAGGGCTTATTACTAT TCAAAGGATGAGAAGCTCATGGTTTATGATTTCTATGACAAGGGGAGCTTGTCTGTTATGTTACATGGCAAAAGAGGAGAAGACAGGACACCATTAGACT GGGAGACAAGAATGAGAGTTGCAATGGGTGCAGCCAAGGGCATTGCATACATCCACACACACCAAACCAAGGTCCACGGAAACATAAAATCATCAAACAT CTTCCTAAACTCCGACGGGTATGGATCCATCTCGGACCTCGGGTTAGCCACACTGATGAATCCAATCCCCACACCGGTACAAAAATCTGGTACAGGGTAT CGTGCTCCGGAGATACTAGACCCTAGGAAGGCCACCTCAGCATCCGACGTGTACAGCTTCGGAGTTTTGATACTAGAGCTACTCACCGGGAAATCCCCAA CATCACCGGATGTAAACCTGGTGAGATGGGTGAATTCTGTGGTGAGGGAGGAATGGACCGCCGAGGTGTTTGATCTGGAGCTTCTGAGGTATTCGAATAT CGAGGAAGAGATGGTGGAGATGCTTCAGATAGGGATGAGTTGTGTGGCGAGAATGTCCGAACAGAGGCCGAAGATGGCTGATGTTGTAAAGATGATAGGA GGGATTCGACAAATAAGCTCTGAAGCAAGTCATGCATTGTCTTCAGATGCTGGAGTCGGAATCGCTATGTCAACCCCGACACCTCCAGCCTCTGATGCAG GTACCTCTTCGGGTATGTAG
AA sequence Show only first row Show all	>Lus10014943 pacid=23152805 polypeptide=Lus10014943 locus=Lus10014943.g ID=Lus10014943.BGIv1.0 annot-version=v1.0 METKKAQFIPYAIFLFTITVYSLHTTADPTEDKQALLEFKRRITHISHILNWEKTSPVCTKWTGVTCNHDESRVVALRLPGMGIRGPVPPNTLSRLSAVQ ILSLRSNGISGDFPDDFFRLGNLTSLYLQGNRFTGSLPSDFGAWKQSLSVLDLSGNGFDGSIPNSVSNLTHLTSLNLAGNALSGEIPDISVPSLQSLNLT NNHLTGTVPRSLMLRYPTSAFSGNNLSLQPALPPAIPIEPPNPQPSTENNNNKKLSEQAILGIVLGTCVVGFFTVAILMICCYSKKKAKKDTKLPTSSNS NKKKKKEDHLSKNDSDDHRLVFFEGCSLAFDLEDLLRASAEVMGKGTYGTTYKAALEDARTVAVKRLKEVTVARKDFENRMEVVGRIKHENVCALRAYYY SKDEKLMVYDFYDKGSLSVMLHGKRGEDRTPLDWETRMRVAMGAAKGIAYIHTHQTKVHGNIKSSNIFLNSDGYGSISDLGLATLMNPIPTPVQKSGTGY RAPEILDPRKATSASDVYSFGVLILELLTGKSPTSPDVNLVRWVNSVVREEWTAEVFDLELLRYSNIEEEMVEMLQIGMSCVARMSEQRPKMADVVKMIG GIRQISSEASHALSSDAGVGIAMSTPTPPASDAGTSSGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	0	1
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	2.2	0.8392
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	6.5	0.7993
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	6.6	0.7882
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	6.9	0.7635
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	8.1	0.7877
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	9.0	0.7629
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	9.5	0.7183
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10015790 [exp]	10.7	0.8136
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	11.2	0.7839
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	14.5	0.7609

Compare expression of checked genes

Lus10014943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.