Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53330 178 / 3e-56 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038829 [exp] 325 / 4e-114 AT5G53330 213 / 7e-70 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023600 [exp] 222 / 1e-73 AT5G53330 216 / 3e-71 Ubiquitin-associated/translation elongation factor EF1B protein (.1) Potri.012G033300 [exp] 219 / 2e-72 AT5G53330 192 / 8e-62 Ubiquitin-associated/translation elongation factor EF1B protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014944 pacid=23152822 polypeptide=Lus10014944 locus=Lus10014944.g ID=Lus10014944.BGIv1.0 annot-version=v1.0 ATGGATTACGATTTCAGAAACCGATCCAACTCGCCTTACGATCCTCAGATCCCGAGCTACAACAGATCATCCACCTCATCTTCCTCCGCTCATCCGATGT ACGGAGCTCCTGCTTACCCGAGAGTCGGCGGTGGATACGGCGGAGCTCCTCCCGTTGGCCGCCACCCCTCTTACCATCAGAACTCGGCTCCTCCGCCGTC TTCTTCTTCCTCTGGATTGGGGATCCGAGTTGCCTTGAAGCCGGAGTACCGTATCTCGCCGCCGCCTCAATTATTGCCGATGAGAGAGGTTCCTCGTAGC AATTTCCAGTTCGATTTCGAGTTTGAGCGGAAGCTGTTGGCTGAGGCAGAGAAAGGGGAGATAAACTGGAGCAGGCTAGGATTGGATAATTTGCCTCCCA AGGCTACTGAATCGACTTCTTCTTCATCGGGTTCAGGGGGCGATCCTGTAGTGAGCAAATACATTGCTGCCGGACTTAATCGAGATGCTGTTCCTGTTGC AGTTGCCAACTATGGAGATAACCCGGCAAAGGTTCAAGAATTCGCCAAGGGTTACACCCTACTACGAGAAATGGGATTCTCGTCGAACAATGTAGCTGAA GCGCTCCTCATGAATGACAATGACACAGACAAGGCATTGGCGCATTTCCTTAACAGTCCTTCGTAA
AA sequence Show only first row Show all	>Lus10014944 pacid=23152822 polypeptide=Lus10014944 locus=Lus10014944.g ID=Lus10014944.BGIv1.0 annot-version=v1.0 MDYDFRNRSNSPYDPQIPSYNRSSTSSSSAHPMYGAPAYPRVGGGYGGAPPVGRHPSYHQNSAPPPSSSSSGLGIRVALKPEYRISPPPQLLPMREVPRS NFQFDFEFERKLLAEAEKGEINWSRLGLDNLPPKATESTSSSSGSGGDPVVSKYIAAGLNRDAVPVAVANYGDNPAKVQEFAKGYTLLREMGFSSNNVAE ALLMNDNDTDKALAHFLNSPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	1.0	0.9246
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	1.4	0.9006
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	3.0	0.8920
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	3.9	0.8615
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	4.9	0.8864
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	5.5	0.8753
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	5.9	0.8829
AT5G01960			RING/U-box superfamily protein...		Lus10011027 [exp]	6.0	0.8692
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	6.6	0.8733
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	8.5	0.8800

Compare expression of checked genes

Lus10014944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.