Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53340 468 / 6e-167 Galactosyltransferase family protein (.1.2) AT4G32120 301 / 5e-101 Galactosyltransferase family protein (.1) AT2G25300 298 / 8e-100 Galactosyltransferase family protein (.1) AT1G77810 253 / 1e-81 Galactosyltransferase family protein (.1.2) AT1G32930 246 / 5e-79 Galactosyltransferase family protein (.1) AT1G05170 245 / 2e-78 Galactosyltransferase family protein (.1.2) AT2G32430 236 / 9e-75 Galactosyltransferase family protein (.1) AT1G11730 233 / 4e-74 Galactosyltransferase family protein (.1) AT1G22015 232 / 2e-73 DD46 Galactosyltransferase family protein (.1) AT4G26940 230 / 1e-72 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038830 [exp] 574 / 0 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 436 / 7e-154 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10032350 [exp] 433 / 1e-152 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10001920 [exp] 276 / 3e-90 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10033248 [exp] 246 / 6e-79 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 243 / 2e-77 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10001954 [exp] 247 / 3e-77 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1) Lus10040062 [exp] 239 / 6e-76 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 236 / 2e-75 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023700 [exp] 521 / 0 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 490 / 1e-175 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.006G257200 [exp] 318 / 7e-108 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.018G024500 [exp] 312 / 3e-105 AT4G32120 538 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 252 / 4e-81 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 244 / 4e-78 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 243 / 9e-78 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 243 / 1e-77 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 238 / 1e-75 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 235 / 8e-75 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014945 pacid=23152776 polypeptide=Lus10014945 locus=Lus10014945.g ID=Lus10014945.BGIv1.0 annot-version=v1.0 ATGGGCGGCGGCGGTAAGGTTTCAGGAAATCGAGGATCCGGTTCTGCCCATGGATCAAGAATACCGACTATGCTGTTCTCCATGTTTGCTACTTTCGCCT CCATTTACGTCGCCGGCCGGTTATGGCAGGATTCACAGCATAGAGTTCATTTGATGAAAGAGCTTGACCGGATTACTGGACAGGGCCAAACTGCCATTTC AGTGGAAGATACATTGAAGATCATTGCCTGCAGGGAACAACAGAAGAAGTTGTCAGCTATTGAGTCCGAGCTGGTCTTGACCAAGCAAGAGGGGTTCTCT TCAGACAATAGTGCTGATCGAGGGAAGAAACGACAGCTTGTAGTGATTGGAGTCATGACAGTGTTTGGTCATAAGAATAATCGAGATGCTGTTCGCAAAG CATGGATGGGAAGTGGTGGAAGTTTGAACAAAATGGAGACGGACAAAGGAGTAGCTGCACGATTCGTCATTGGAAAAAGTGCAACTCGTGGAGATACCTT GGACAGAACCATTGACAGCGAAAATCAACAGACTAATGACTTCATTATTCTCGATGATCATGTGGAAGATACTGACGGACTCTCGAAGAAGGCTAAATTA TTTTTCGCCCATGCCGTAAGTAAATGGGATGCTGACTACTATGCAAAAGTGAACGATAATATCTATGTGGACATTGATGCCCTTGGAGCTACACTAGCAA CCTATTTGGATAAACCTCGTGCCTACATTGGATGCATGAAGTCCGGGGAAGTCTTTTCTGAACAGAGTCACAAGTGGTACGAACCAGATTGGTGGAAATT CGGTAATAAGAAATCGTACTTTCGCCATGCTTCCGGCGAGATGTATGTCCTGTCACAGGCCCTCGCTAAGTTCATATCAATCAACAGATCTATGCTCCGC TCCTACGCACATGATGATGTCAGTGCCGGGTCGTGGTTTATCGGGCTCGATGTCCATCATGTGGATGAATCTAAGTTCTGCTGCTCATCTTGGACCTCAG GTCTCGTTTTTTGA
AA sequence Show only first row Show all	>Lus10014945 pacid=23152776 polypeptide=Lus10014945 locus=Lus10014945.g ID=Lus10014945.BGIv1.0 annot-version=v1.0 MGGGGKVSGNRGSGSAHGSRIPTMLFSMFATFASIYVAGRLWQDSQHRVHLMKELDRITGQGQTAISVEDTLKIIACREQQKKLSAIESELVLTKQEGFS SDNSADRGKKRQLVVIGVMTVFGHKNNRDAVRKAWMGSGGSLNKMETDKGVAARFVIGKSATRGDTLDRTIDSENQQTNDFIILDDHVEDTDGLSKKAKL FFAHAVSKWDADYYAKVNDNIYVDIDALGATLATYLDKPRAYIGCMKSGEVFSEQSHKWYEPDWWKFGNKKSYFRHASGEMYVLSQALAKFISINRSMLR SYAHDDVSAGSWFIGLDVHHVDESKFCCSSWTSGLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53340			Galactosyltransferase family p...		Lus10014945 [exp]	0	1
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	17.1	0.8343
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Lus10037290 [exp]	40.9	0.7473
					Lus10018257 [exp]	41.8	0.8044
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	48.0	0.8103
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Lus10037589 [exp]	48.3	0.8152
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10008561 [exp]	54.8	0.8130
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	55.8	0.8123
AT2G01460			P-loop containing nucleoside t...		Lus10027063 [exp]	59.4	0.8093
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	67.1	0.7865
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10036018 [exp]	69.3	0.7897

Compare expression of checked genes

Lus10014945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.