Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52910 508 / 3e-161 ATIM timeless family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038831 [exp] 998 / 0 AT5G52910 959 / 0.0 timeless family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024300 [exp] 681 / 0 AT5G52910 1019 / 0.0 timeless family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04821 [flax] [poplar] TIMELESS Timeless protein PF05029 [flax] [poplar] TIMELESS_C Timeless PAB domain
Representative CDS sequence Show only first row Show all	>Lus10014946 pacid=23152803 polypeptide=Lus10014946 locus=Lus10014946.g ID=Lus10014946.BGIv1.0 annot-version=v1.0 ATGGAGACGGAAGGTCTGGCTCCGATCTGCGCCGGCCTCGGAATAGCAGAAGAGGACGACAACGGCAACCGAATTGGCTACTTCAAGGACCAGCAGTGTC TCGAGAATCTGAAGGATCTGGTGAGATTTCTGAGGCGCGATGACCCGCAGACGCGACTAGTGTTCAAGCAAGTGTGCAAATGGAACACAGTCCCTAATAA TTTGATTCCTATGTTCCAGTACTGCCAGGACGATCGCGATTTGGTCTTGAATGCTGTGAAGGTTTTGGTGTTCCTTACGATGCCGATTGATCAGTCATCG AACGATGTCAATTTACAATTAGAGTATCTTTGGGGTTTGAAATCTGCAATAACATGTACCGAGACTGTTGCTGTAATCGTTTCACTCTTGGAAGGACCGC TTGAAAACTTAGAGTGTGATGTTAGCTTATTGATGCGCAGTGAATCATTGACAGAGGATGATTGGAAATTGATTCAGTTAGTACTGACCCTGTTTCGCAA CATCCTTGCAATTCAAGATGTGCCCTTGATGGGGGGATCCGCTTGTGAATTCGTATCACTGAGGGACAGATTCCTCAAGCTGTTATTCAACGAGAATGTG ATGGACTTGATTTTAGTGTTAACTCAGCATGTTGATGGCTCGCGTGGCTTTCTTCGTCACGATAACTTGCTTTTGCTGGAAGTTTTCCATTACATCTTCC TGGGGCAAGATCCCGATCTGATTGCAAAAGCTCGCTTCAAGGATTCCAAGGTAGGAAGCATTGCGTATGCTGACAATCTCAAATCTATTATGGAGGTGGA GAAACAGAAACTTAAACAATGCAGAGCACAGAATCTAGCTCGTCACTCCCAGTTCAGTGGGACATTTTCCCGGATTACCATGGATGGTTCTAAAACAGTA TGCAAAGTTAATCCTGGTGCTGTTTCCAATAACTTGCTTAAGCCTCATGCCGTGCAAAGGGGTGCAACTAAAAAAATTGCTTGGGACCATGACAAGTTTC CTGTAACTGATGATAAGATCTTAGAGCTGCTACATGATTTCATGAAGCAGTTTCTCTCGGGAAGTTATAATGTTTTGATCAAGTCAATTCGTGAAGATAT CGAAAAGGAACAAATTGCAGTTCAGAAGAGTGATATCATTGTTTTCTTCCAAGTCGTCCAGTTTGTTACTTCATTTCAATATTCTACCCTCTTGAATTCA AAGGAAACTGCGAAGGTTTCTCCTCAAGCCTCTGACATTCATGATGATAGTACGGTATTCACGGGTGATGTATGTGGACCAATTGCTGAATCAATGAAGG AATCAATGTTTCTAATGGTTATCTCAACATGGCGGGATGCTTTTGATGCTCTAAAGCAAACACACGAATACAAGTTACTTTCTGCAGCTGGCTCAGTTAT GAAAATTATGATTCGCATTTTAGACTTGGTGCTCAAGGTACTGCCTGAAAATTCTAAAGAGCCTCAGACAGCTCGCATACTGCTTTACAAGTTATTCTAT GATCAGACTGATCAAGGGATGACCCAGTTCCTCTTGAACCTGATTAAATCATTCAACACTCATAAACAATCTAAAAGCTTCATTTTCTTGGTATTGTTTC ATGACGGAGTTTCTGTCAATCGTCTTACTAACAAACAAGATGACATTGACAATGCTGTCCCTGCCGAAAAACCTGACATATCTCTGGAGATGGGAAATCC TGACAGTAGCAGTCCGCCAGATAACAGAAATGATCATATAGATGATGATCTTTCTTGCAGCTCAGATGATGACTCGGCCGATGACCAACCTGTTTCCAAC TACGAAGTTGACTTCAACGTCTCGGCTTTCATGAAATCCTTTGCAAACCATAGCATCATCAGCAATCTGTGCTGGCTGCTTAGATTCTATAAGAGCAATT CAGTCGGCACAAATCATTACATCATAACCATGTTGCGCCGGATCAAAGAAGACCTCGACCTTGCTCCAATGCTATATCAGTTATCACTACTCACAACATT TTACGACATCCTAAACGAGCAAAAGGCAAGCAAGTGCAAGGAATATGAAAACATTGTCGAGTTCCTTACGACCCTGGTGAGAAGAATGCTGAGAAAAATG AAGAATCAACCTCTTCTCTTCCTCGAACTGCTCTTCTGGAAGTCCCGCACAGAATGCCAGTACATTAACACAGACTATCTAGTACACGAGCTGGGCAGTT TGAGAAAGAAGACTAAAGCCTTCAATGGTTCCGAAGAAAATGGAGACGTTGGTTTATCAGGTGCTGCCACGGAATGGGCTCCCAGGAGCATTGCAGATGC ACTGGGCGACGATGAAGCTGATGTCATGATCTCTCATGACACTGACGATAAAGAAATGCAAGAGAACTCTGTCGAATTGCAGAACGAGAAGGCGTCAACT TCAGGCAGCAATTTCTCCAGAAATGGGGACAAAAATGAAAGAGTTCCTAAAAAGAAAAGACTTGTTCTTACTGAGGAAATGGAGATCAAGATCAAAGATC TCTACGAAGAATTCAAGGACGACGAGAAATGCTGCAATCTCATCGCCGAATATCTTGATCCTACGGGTGGAATCTCGCCAACCCAGGTCTTCAACAAGCT GAAGCAACTTGGCTTGAAAGCTTCATTAAGGAAAAGGATGCGAAATGCCAGAAGAGAACCAGACTCTACGAATGCTGCTGATGATCAGCCCTCTCAAGGT GAAAAATTGACAGAAGAAGAAAGCTTGCAGATAAAGCAATCAACTGTCTCTAGGAAAAGAGCTCGGGCCATTGGAAAGGATCAGGAAGATAAACTAAGAG ATTTATACGAGCAGTTTAAAGGGGAAAAGAAATGCAGTCATATGATTGCTAATGCTCTGGCACCAGAAGGTTGTTTCACTGCTGCCCAAGTTTCCCGCAA GCTCAAGCAACTTGGATTAGTCGTTCCTCGGAAGAAGAGGTCTCAGACGGATGATTTCATCGATGACCATGAATCTGATGACGAAACATTGATGTCCTTC AAAGAGAGGAGAGCAAAGGACACACGAGAACGAAAGAGAAGCAAAAAGTCAACTCCAGAAGCCACGACGACGCCGGCGGGAGAAAGTGAGGTTCCCGGTG AAGGAACCATCGATGAGATTGATACACCTGCTAACGCCGACGAACAGATGATGACGGCGGATGACGTGGAGGAAGATAGTGGCGTGGATGATGACTCGCA TGCTGACGAGGCTCGTGGTAGTGAGCTGGAGGACGATGACGTGGATGTTTCTCCGGCTGACGAGGACGGGAAGCTGATGGAAGATGAGCTGGAGGACGAT GACGTGGATGATTCTCAGGTGGTGGACGATGGTGACGTGGGAGGCTCCGTTCAACAGATGCGGAGGAAGTCGAGGATGATTATTGACGATGACGACGACG ACGATGAGTAA
AA sequence Show only first row Show all	>Lus10014946 pacid=23152803 polypeptide=Lus10014946 locus=Lus10014946.g ID=Lus10014946.BGIv1.0 annot-version=v1.0 METEGLAPICAGLGIAEEDDNGNRIGYFKDQQCLENLKDLVRFLRRDDPQTRLVFKQVCKWNTVPNNLIPMFQYCQDDRDLVLNAVKVLVFLTMPIDQSS NDVNLQLEYLWGLKSAITCTETVAVIVSLLEGPLENLECDVSLLMRSESLTEDDWKLIQLVLTLFRNILAIQDVPLMGGSACEFVSLRDRFLKLLFNENV MDLILVLTQHVDGSRGFLRHDNLLLLEVFHYIFLGQDPDLIAKARFKDSKVGSIAYADNLKSIMEVEKQKLKQCRAQNLARHSQFSGTFSRITMDGSKTV CKVNPGAVSNNLLKPHAVQRGATKKIAWDHDKFPVTDDKILELLHDFMKQFLSGSYNVLIKSIREDIEKEQIAVQKSDIIVFFQVVQFVTSFQYSTLLNS KETAKVSPQASDIHDDSTVFTGDVCGPIAESMKESMFLMVISTWRDAFDALKQTHEYKLLSAAGSVMKIMIRILDLVLKVLPENSKEPQTARILLYKLFY DQTDQGMTQFLLNLIKSFNTHKQSKSFIFLVLFHDGVSVNRLTNKQDDIDNAVPAEKPDISLEMGNPDSSSPPDNRNDHIDDDLSCSSDDDSADDQPVSN YEVDFNVSAFMKSFANHSIISNLCWLLRFYKSNSVGTNHYIITMLRRIKEDLDLAPMLYQLSLLTTFYDILNEQKASKCKEYENIVEFLTTLVRRMLRKM KNQPLLFLELLFWKSRTECQYINTDYLVHELGSLRKKTKAFNGSEENGDVGLSGAATEWAPRSIADALGDDEADVMISHDTDDKEMQENSVELQNEKAST SGSNFSRNGDKNERVPKKKRLVLTEEMEIKIKDLYEEFKDDEKCCNLIAEYLDPTGGISPTQVFNKLKQLGLKASLRKRMRNARREPDSTNAADDQPSQG EKLTEEESLQIKQSTVSRKRARAIGKDQEDKLRDLYEQFKGEKKCSHMIANALAPEGCFTAAQVSRKLKQLGLVVPRKKRSQTDDFIDDHESDDETLMSF KERRAKDTRERKRSKKSTPEATTTPAGESEVPGEGTIDEIDTPANADEQMMTADDVEEDSGVDDDSHADEARGSELEDDDVDVSPADEDGKLMEDELEDD DVDDSQVVDDGDVGGSVQQMRRKSRMIIDDDDDDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	0	1
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	1.0	0.9842
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	1.7	0.9761
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	2.0	0.9787
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	3.9	0.9720
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	4.9	0.9741
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	6.5	0.9615
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	6.9	0.9632
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	6.9	0.9612
AT4G15890			binding (.1)		Lus10001471 [exp]	8.1	0.9575
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	8.7	0.9432

Compare expression of checked genes

Lus10014946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.