Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21090 215 / 3e-71 ATMFDX2 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) AT4G05450 211 / 1e-69 ATMFDX1 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 1, mitochondrial ferredoxin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038832 [exp] 0 / 1 AT4G21090 216 / 4e-71 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G182100 [exp] 216 / 1e-71 AT4G21090 260 / 2e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3) Potri.001G044700 [exp] 214 / 5e-71 AT4G21090 259 / 6e-89 ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MITOCHONDRIAL FERREDOXIN 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10014947 pacid=23152791 polypeptide=Lus10014947 locus=Lus10014947.g ID=Lus10014947.BGIv1.0 annot-version=v1.0 ATGGCTGACGAAATGAACTCTCCAGGACTTCGCGACGAATCGGAAGTCCGTCGGAAAATCCGGCATGATACAAGCAAACAGAGTGTTTTAAGTAAGCTTC AGTCGCAACAAGCATGGTTATGTCCAGGCTTTCTAGGATTGGAGTTGGAATCGCTAGAAGTTTCTCCAGAGGCAGATGTATTACCAGCTTATGCAGAACA GTGTCTGTACCGAGACCTTATGGCCAGTGTTTGCAACATCAGGATATCCGTAACTTTTGTCGACAAAGACGGAGAGGAAACAGTTATCAAGGTCCCGGTG GGAATGTCGATGTTGGAAGCTGCTCACGAAAACGATATAGAGCTAGAAGGCAAGAACTCTCAAGTTTCATTCTCTTCCCTCGTTATAGGAGCATGTGAAG GCTCTCTTGCCTGTTCAACGTGTCACCTGATAGTGATGGACGTTGAATACTACAACAAGCTAGAGGACCCAACAGACGAGGAGAACGACATGCTCGATTT GGCATTCGGGCTAACAGAGACTTCTCGTCTAGGCTGCCAAGTCATCGCGAAGCCTGAGCTCGACGGATTGCGAGTAGCTGTTCCTGCCGCCACTCGAAAT TTTGCTGTTGATGGGTTTGTACCGAAACCACACTAG
AA sequence Show only first row Show all	>Lus10014947 pacid=23152791 polypeptide=Lus10014947 locus=Lus10014947.g ID=Lus10014947.BGIv1.0 annot-version=v1.0 MADEMNSPGLRDESEVRRKIRHDTSKQSVLSKLQSQQAWLCPGFLGLELESLEVSPEADVLPAYAEQCLYRDLMASVCNIRISVTFVDKDGEETVIKVPV GMSMLEAAHENDIELEGKNSQVSFSSLVIGACEGSLACSTCHLIVMDVEYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGLRVAVPAATRN FAVDGFVPKPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10014947 [exp]	0	1
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	4.0	0.8587
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	7.9	0.8481
AT3G15080			Polynucleotidyl transferase, r...		Lus10011026 [exp]	11.6	0.8676
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	11.9	0.8808
AT3G46430			unknown protein		Lus10005449 [exp]	13.3	0.8167
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023457 [exp]	19.4	0.8783
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10014950 [exp]	20.6	0.7877
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	22.4	0.8695
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	26.0	0.8768
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10006487 [exp]	28.6	0.8561

Compare expression of checked genes

Lus10014947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.