Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23630 304 / 2e-104 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT5G41600 300 / 2e-103 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT4G11220 300 / 5e-103 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT1G64090 298 / 2e-102 RTNLB3 Reticulan like protein B3 (.1.2) AT2G46170 296 / 7e-102 Reticulon family protein (.1.2) AT3G61560 273 / 9e-93 Reticulon family protein (.1.2) AT3G10260 219 / 3e-71 Reticulon family protein (.1.2.3) AT4G01230 199 / 9e-64 Reticulon family protein (.1) AT3G18260 183 / 8e-58 Reticulon family protein (.1) AT3G10915 135 / 6e-39 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038833 [exp] 445 / 1e-160 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10027548 [exp] 410 / 7e-147 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 406 / 4e-145 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10039307 [exp] 399 / 5e-142 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 302 / 1e-103 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10036405 [exp] 290 / 3e-99 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10028753 [exp] 309 / 1e-98 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10041080 [exp] 288 / 1e-98 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10017533 [exp] 281 / 1e-95 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035600 [exp] 319 / 1e-110 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 318 / 1e-110 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 318 / 3e-110 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 304 / 5e-105 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 304 / 6e-105 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 291 / 5e-100 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 232 / 1e-76 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 225 / 6e-74 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 202 / 4e-65 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.015G044300 [exp] 179 / 5e-56 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10014948 pacid=23152836 polypeptide=Lus10014948 locus=Lus10014948.g ID=Lus10014948.BGIv1.0 annot-version=v1.0 ATGGCGGACAACGTCAGCGACCACGATTCACTCGTAGAGAAGATCACCGAGAAGATTGACGGATCTTCATCCTCGTCTTCCTCTTCCTCCTCCGACGACG ACGACAACAAGCCTTCCAAAGTCGAGGCCGTCAAATCCAAGATTTATCGCCTCTTCGGCCGTGACAGGCCCGTCCACAAGGTCCTAGGCGGCGGCAAACC TGCTGATGTTCTTCTATGGAGGAACAAGAAAGTTTCAGGGGCAGTGATCGGTGTTGCAACCGCGATCTGGGTTCTATTCGAATTGATGGAATACCATCTG ATCACTCTGGTTTGCCATCTCTGGATCCTTTCGCTGGCTATCCTCTTCCTGTGGTCCAACGCTACGACCTTCATAAACAGATCGCCACCTCAAATCCCTG AAGTTGTGATTCCTGAGAAGTGCATCCATGAAGTTGCATCGGGGTTGAGATACGAATTCAACCGGGGATGCACTGTTCTGCGCGAGATCTCATCTGGGAG GGATATTAAGAAGTTTGTGATCGTGATTGCTGGCTTGTGGTTTATATCCATCATTGGTAGCTGCTGCAACTTCTTGACACTGTTCTACATAGTGTTCGTG TTACTGCACACTCTGCCCGTGCTGTACGAGAAGTACGACGACAAGGTCGATGCATTTGCCGAGAAGGCGATGATTGAGCTCAAGAAGCAGTATGAAGTAT TTGAGGCCAACGTTGTGAGTAAGATTCCTAAAGGTCCATTGAACAAGAAGAAGGATTAG
AA sequence Show only first row Show all	>Lus10014948 pacid=23152836 polypeptide=Lus10014948 locus=Lus10014948.g ID=Lus10014948.BGIv1.0 annot-version=v1.0 MADNVSDHDSLVEKITEKIDGSSSSSSSSSSDDDDNKPSKVEAVKSKIYRLFGRDRPVHKVLGGGKPADVLLWRNKKVSGAVIGVATAIWVLFELMEYHL ITLVCHLWILSLAILFLWSNATTFINRSPPQIPEVVIPEKCIHEVASGLRYEFNRGCTVLREISSGRDIKKFVIVIAGLWFISIIGSCCNFLTLFYIVFV LLHTLPVLYEKYDDKVDAFAEKAMIELKKQYEVFEANVVSKIPKGPLNKKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10014948 [exp]	0	1
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	2.8	0.8746
AT1G03400			2-oxoglutarate (2OG) and Fe(II...		Lus10007818 [exp]	3.9	0.7981
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	7.5	0.8456
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10016143 [exp]	8.3	0.8401
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002738 [exp]	8.5	0.8122
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	14.8	0.8327
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	15.1	0.8374
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Lus10036368 [exp]	15.6	0.8053
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	16.5	0.7899
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	18.5	0.7929

Compare expression of checked genes

Lus10014948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.