Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52850 664 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 373 / 1e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 335 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 332 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21300 330 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 329 / 5e-100 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 327 / 1e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 322 / 4e-97 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 321 / 6e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 320 / 6e-97 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 399 / 2e-125 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 393 / 3e-122 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 388 / 2e-121 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 379 / 4e-118 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 379 / 4e-118 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 357 / 2e-111 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 358 / 4e-111 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 366 / 1e-110 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 355 / 2e-110 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071800 [exp] 852 / 0 AT5G52850 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 423 / 1e-133 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 405 / 5e-128 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 374 / 1e-115 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 359 / 6e-111 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 352 / 3e-107 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 344 / 1e-105 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 340 / 3e-104 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 333 / 3e-102 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 332 / 9e-102 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014950 pacid=23152806 polypeptide=Lus10014950 locus=Lus10014950.g ID=Lus10014950.BGIv1.0 annot-version=v1.0 ATGGCGAGCAAGGCTGCGAGCTATGTCCTAAACGGAGCAGCGGACTTACGTTACTGTATGGAACTGGAAGACATTCTGACTCGGGTAGTCTCGTTCTGCA GCTCGAGGTCACTGAAAGAAGGTATCTGCGTCCACGCTCCTTTGGTCAAGCTCTGCATCCATGATCATCTCTACTTGAACAACAATCTCTTGTCTCTCTA TGGGAAATGCTTCGGTTTGAAGAACGTCCGCCAGCTGTTCGACGAAATGCCGCTGAGAGACGTAGTCTCATGGTCGGGGCTTCTCTCGACGTATACAAAA AACGGACAACACGAAGAAACACTAGATGCGTATCGAGACATGGAGCTTTCCGGTACGTGTCCGAACGCTTTCACTTTCTCGTCGGTGTTACGATCTTGTG CTGCGTTGAGTGATTTGGAGTTCGGGAAGCGGGTTCATGGCTCCTTGGTTAAACATGGATTGAAATCGAACCCGATATTAGGAAGTTCTTTGATTGAATT GTATTCTCAGTTTGACGGTGGTGATGATGATATGGATAAAGTGTTCGGGTTGATTGATGATGGCGATGTTGTAACATGGACGGCCATGATTTCTTCATCT GTCCGTGCTGGTAAGATGAACAGAGCCTTGAAGCTTTACTTGGAAATGATCAAAGCTGGTATAGCTCCAAATGGATTCACTTTTCCTAAAATTTTAACAG CTTGTGGAGTTCTCGGATTGCAGTTTGGGAAACAGGTTCATGGTCATTCCGTGGTTCATGGTGCTGAGATGAATCTGGTAATGAAGACATCTCTTGTTGA CATGTACTCAAAGAACAGAATGATGGAAGATTCGGTCAAGGTCGCTAAGCTAACCCCTGAATCGGATGCGTTCCTATGGACTCGAATCATCACGGGTTTT GCTCACAGCTCGAAGTTCGAACAGGCATTTGCTGCACTTCGAGACATGAGGATTTCTGGAGTGTCCCCGAATGAGGTTACCTACTTGGTTCTGCTCAGCA ATTGTTTGTCGGGTTCGCTCGATATCGGTAGACAGATCCACTCGAGATTGATCGTAGCCGGACTCGATGATGCAGGGCATGTCAGTAATGCACTTCTTGA CATGTACTTGAAATACTCTGACGTGGCAGATGACGGATTGAGAGTGTTTCGAGAAATGATATCGGTTAGCGTCGTGTCGTGGACGTCGTTGATTGCTGGT TTCGCTGAGCACGATCGAGATTCACTTTGTCTGTATAAGGAGATGAGAGCTTCTGGATTGCAGCCGACTACTTTTACTCTGTCTATCCTCCTTGAAGCCT GTAGAGCAGTGAAGTCAACGAGCCGGACGTTGCAGCTCCATACACACGTAATCAAGGCGAATGCGGTTCAGGATATCTTCGTGGGGAATGCTCTCGTCGA TGCTTATGCCGGGTCAGGAAGATTCGAGGATGCGTGGAGAGCCGTTCGAACAATGAACCATAGAGATGCAATTACGTACACAAGTTTGGCCACAAGGCTT AACCAGAGTGGCCATCACAGAGAGGCGTTAGAGATAGCCACTCACATGCTTAATAACGATGAAGTGAAAATGGATGCCTACAGTCTAGCTTGCTTCTTAT CAGCTTCTTCTTACCTTGCTACGCAAGAAACCGGCCAGCAACTTCACTGCCTTTCATTAAAGTCCGGTTTCGGCTCCAGCATTTCGGTGCTGAACACCCT AGTCGACTTCTACAGCAAGCGCGGAGGATCACAAAGCCTAGACGATGCAAAGAGAGCCTTTACAGAGATCGAAGAACCCGACGCGGTGTCGTGGAATGGG TTGATGTGTGGGCTGGCATCGACCGGGCGAATCAATGAAGCTCTCTCGACTTTTGAGGAAATGAGGCTGAACGGAGTGGCTCCCGACTCTGTCACGTTCT TGTCGGTGCTGTTCACCTGCCAACAAGGCGGTTTAGTGGATCGGAGCCGTGAGTATTTCTTGTCGTTCAAGGAACAGCATAACTTGGAACCCAAGTTAGA GCATTATGGTTGTTTGATTGATACTATTTGCAAATCTGGACGTCTGGAAGAGGCGATGGAGGTTCTGGAAACTATGCCATTGGAGCCGAATGCTTCGATC TATAAGACTATATTGGCTGCTTGCAGAGTTCATAAGAATCTACGGCTTGGAGAAGATATAGCGAGAAGAGGTCTGGAGATTTGCCCCGAGGATCCGGTTT TCTACGTTTGGCTTGCTAAGCTGTACGATGAATGCGATCGACCTGATTTGGCTGAGCAGACTAGGAAGTCGAAGAGGGATCGGTTTTCGTGGGTCAAACC GGTTGGATTAAAGGAACAAGACTCTGTTCCAAACTTGAGGCATGTTGTTTCGGGTTATTCTTGA
AA sequence Show only first row Show all	>Lus10014950 pacid=23152806 polypeptide=Lus10014950 locus=Lus10014950.g ID=Lus10014950.BGIv1.0 annot-version=v1.0 MASKAASYVLNGAADLRYCMELEDILTRVVSFCSSRSLKEGICVHAPLVKLCIHDHLYLNNNLLSLYGKCFGLKNVRQLFDEMPLRDVVSWSGLLSTYTK NGQHEETLDAYRDMELSGTCPNAFTFSSVLRSCAALSDLEFGKRVHGSLVKHGLKSNPILGSSLIELYSQFDGGDDDMDKVFGLIDDGDVVTWTAMISSS VRAGKMNRALKLYLEMIKAGIAPNGFTFPKILTACGVLGLQFGKQVHGHSVVHGAEMNLVMKTSLVDMYSKNRMMEDSVKVAKLTPESDAFLWTRIITGF AHSSKFEQAFAALRDMRISGVSPNEVTYLVLLSNCLSGSLDIGRQIHSRLIVAGLDDAGHVSNALLDMYLKYSDVADDGLRVFREMISVSVVSWTSLIAG FAEHDRDSLCLYKEMRASGLQPTTFTLSILLEACRAVKSTSRTLQLHTHVIKANAVQDIFVGNALVDAYAGSGRFEDAWRAVRTMNHRDAITYTSLATRL NQSGHHREALEIATHMLNNDEVKMDAYSLACFLSASSYLATQETGQQLHCLSLKSGFGSSISVLNTLVDFYSKRGGSQSLDDAKRAFTEIEEPDAVSWNG LMCGLASTGRINEALSTFEEMRLNGVAPDSVTFLSVLFTCQQGGLVDRSREYFLSFKEQHNLEPKLEHYGCLIDTICKSGRLEEAMEVLETMPLEPNASI YKTILAACRVHKNLRLGEDIARRGLEICPEDPVFYVWLAKLYDECDRPDLAEQTRKSKRDRFSWVKPVGLKEQDSVPNLRHVVSGYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52850			Pentatricopeptide repeat (PPR)...		Lus10014950 [exp]	0	1
AT5G44450			methyltransferases (.1)		Lus10028142 [exp]	3.5	0.7297
AT5G57300			S-adenosyl-L-methionine-depend...		Lus10011441 [exp]	7.4	0.7353
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10006818 [exp]	10.4	0.7375
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	11.4	0.8016
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10014947 [exp]	20.6	0.7877
AT2G18220			Noc2p family (.1)		Lus10025551 [exp]	24.5	0.7519
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	29.8	0.7719
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10000017 [exp]	51.7	0.6610
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10018734 [exp]	138.7	0.6734
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10030560 [exp]	150.2	0.6570

Compare expression of checked genes

Lus10014950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.