Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52840 265 / 4e-92 NADH-ubiquinone oxidoreductase-related (.1) AT4G28005 105 / 5e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038835 [exp] 333 / 4e-119 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10027539 [exp] 310 / 5e-110 AT5G52840 275 / 3e-96 NADH-ubiquinone oxidoreductase-related (.1) Lus10039296 [exp] 310 / 1e-109 AT5G52840 271 / 1e-94 NADH-ubiquinone oxidoreductase-related (.1) Lus10043440 [exp] 191 / 6e-61 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071900 [exp] 276 / 2e-96 AT5G52840 265 / 5e-92 NADH-ubiquinone oxidoreductase-related (.1) Potri.017G149100 [exp] 249 / 7e-86 AT5G52840 250 / 3e-86 NADH-ubiquinone oxidoreductase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04716 [flax] [poplar] ETC_C1_NDUFA5 ETC complex I subunit conserved region
Representative CDS sequence Show only first row Show all	>Lus10014951 pacid=23152738 polypeptide=Lus10014951 locus=Lus10014951.g ID=Lus10014951.BGIv1.0 annot-version=v1.0 ATGTTCCTCCGGGCAATTGCGCGGCCGTTAATGGCCAAGGTGAAGGAGACGACAGGGATCGTCGGCCTCGACGTCGTCCCGAACGCCAGAGAAGTGCTGA TCGGACTCTACACCAAAACCCTAAACGAGATTCAGGCCGTGCCTCCGGACGAAGGTTACAGGAAGGCGGTGGAGAGCTTTACTAAGCACAGGATGAAGGT CTGCCAAGAGGAGACGGATTGGGAGGCGATCGAGAAGAAGCTCGGGTGCGGCCAGGTCGAGGAGCTGATCGAGGAGGCCCAGGACGAGCTCAAGCTCATC GCGAAAATGATTGAGTGGGATCCCTGGGGTGTTCCAGACGACTACGAATGCGAAATCGTGGAGAACGACGCTCCAGTTCCTAAGCATGTTCCTCTACATC GACCCGGACCCCTCCCCACGGAGTTCTACAGTACGCTTGAAACTCTGCAATCGAATTCTAAGGAAACACCTGTTGTCGCCTCCGGTGAGTCGAAGGCTGT GCAGTAG
AA sequence Show only first row Show all	>Lus10014951 pacid=23152738 polypeptide=Lus10014951 locus=Lus10014951.g ID=Lus10014951.BGIv1.0 annot-version=v1.0 MFLRAIARPLMAKVKETTGIVGLDVVPNAREVLIGLYTKTLNEIQAVPPDEGYRKAVESFTKHRMKVCQEETDWEAIEKKLGCGQVEELIEEAQDELKLI AKMIEWDPWGVPDDYECEIVENDAPVPKHVPLHRPGPLPTEFYSTLETLQSNSKETPVVASGESKAVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10014951 [exp]	0	1
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	2.8	0.8260
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	3.0	0.8516
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	8.3	0.8161
AT5G60340			P-loop containing nucleoside t...		Lus10016525 [exp]	8.9	0.7892
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	12.4	0.8127
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	13.1	0.8157
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	13.6	0.7568
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	14.9	0.8073
AT2G39725			LYR family of Fe/S cluster bio...		Lus10025710 [exp]	17.9	0.6890
AT5G14680			Adenine nucleotide alpha hydro...		Lus10014545 [exp]	19.3	0.7877

Compare expression of checked genes

Lus10014951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.