Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49140 295 / 5e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G24060 292 / 3e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G59300 156 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03890 45 / 4e-05 FMN binding (.1.2) AT3G21200 43 / 0.0003 PGR7 proton gradient regulation 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038836 [exp] 671 / 0 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027532 [exp] 464 / 4e-161 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10039291 [exp] 457 / 2e-158 AT5G24060 400 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148600 [exp] 390 / 3e-132 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G072400 [exp] 385 / 3e-130 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.014G151700 [exp] 153 / 2e-41 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G230700 [exp] 137 / 1e-35 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G035200 [exp] 42 / 0.0004 AT3G03890 452 / 4e-161 FMN binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014952 pacid=23152739 polypeptide=Lus10014952 locus=Lus10014952.g ID=Lus10014952.BGIv1.0 annot-version=v1.0 ATGATGTTCGAGCCAGCTCCCGCCGTATTCCGTCCCTTCGCCGCTTCAGCTCATTATCGCCGAGCAACCACGGAGATCGGCACACTAAGAGGCAACACTC GCCGGCTGCTTCATACGACCGGCTTCGATCTGCTGTGGAAGAGATCTCATATGTCGAGAGCTGGTTCTGTATACAAGAGAAATGTAGTACTAAAGAGTGC GATTCAAGCGTCGGCCAGCTCGGATCATTCTGAGGAGAACGGTAAAGTGCAATGCCATTCATTAGAGGAGGCTGATGGAGGACCCGCTAGGCTTACAGCT GAAGAGACTTGTAGGACTATCGTTGAGGTGAACAGAAAAGCTACTCTGATGCTGACTGACATGTCTAATGAAGAAATTATCTGGCCAGATATGCCATATG TGACTGATGAATATGGAAATGTTTATTTCCAAGTGAAGAATGATGACGAAATACTGCAACAACTTACATCAGAGAACAACTTTGTGCAAGCTATAATAGG ATTCGATACCGAAGAAATGATTGGTGAGATGGAGCTACTAGCTGATTTTGATGCTGAATTTGGGATTGACGATGAAGAAGAAGAAGACAGTGATGATGAG GAAGATGATGATGACTATGATGAGGCCATGGTAACTGTTCTTGAAGACGAAGGAGACGATGAGGATGAAGATGATGACGATGGAGACTGGAACGAATCCG ACACCATGGATTCGCATCCAATGTATTTTGCCAAAAAGCTAACACAGATTGCTTCAGATGATCCCATCGATTGGATGAAGCAGCCCCCAACCGGTTTAGC CATGCAAGGCGTTCTCAGACCTGCACTCCTCGAAGAAAACACCGACATCCAGAGGCATATTTCGAGTCAAGAAACTGAACCCGCGTCATCTGACAATGGT TCAGTTCAAGCAGATGAAGAGACTTCATATTACAAGCTGGAAGCAGGCAAAATCCATCTGATTTCTGCTGATGGACATCAGGCTCTAGAGGGCCTGATCT TCTCGTCACATACGACTGTCGAACCGGAAGATTACAGGAAATCGAAACCTGATGTCGTTGCACGCTCTGCTCGAAAAATCATATCGCATCTCAAAGATGG TGGCGAAGAGGTTGTTGAAGCTTTGGTATCCTTGTGCTTGAGATGTAAAGGCATCCGAGTGGAGGAAGCAGAAGCAATAAGCGTGGATTCACTCGGGTTC GATTTAAGAGTTTGTTCAGGAACTGAAGTCCAGACATTGCGGTTCACATTTAAATCACGGGCCACTTCGGAACAAAATGCAGAGAGACAACTCAACGAAT TACTGTTCCCAAGAAGCGGAGTAGACATCAAGTAG
AA sequence Show only first row Show all	>Lus10014952 pacid=23152739 polypeptide=Lus10014952 locus=Lus10014952.g ID=Lus10014952.BGIv1.0 annot-version=v1.0 MMFEPAPAVFRPFAASAHYRRATTEIGTLRGNTRRLLHTTGFDLLWKRSHMSRAGSVYKRNVVLKSAIQASASSDHSEENGKVQCHSLEEADGGPARLTA EETCRTIVEVNRKATLMLTDMSNEEIIWPDMPYVTDEYGNVYFQVKNDDEILQQLTSENNFVQAIIGFDTEEMIGEMELLADFDAEFGIDDEEEEDSDDE EDDDDYDEAMVTVLEDEGDDEDEDDDDGDWNESDTMDSHPMYFAKKLTQIASDDPIDWMKQPPTGLAMQGVLRPALLEENTDIQRHISSQETEPASSDNG SVQADEETSYYKLEAGKIHLISADGHQALEGLIFSSHTTVEPEDYRKSKPDVVARSARKIISHLKDGGEEVVEALVSLCLRCKGIRVEEAEAISVDSLGF DLRVCSGTEVQTLRFTFKSRATSEQNAERQLNELLFPRSGVDIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	0	1
AT4G39870			TLD-domain containing nucleola...		Lus10024053 [exp]	2.2	0.8063
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	3.5	0.8142
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10025920 [exp]	4.9	0.8077
AT2G36200			P-loop containing nucleoside t...		Lus10022694 [exp]	6.9	0.7914
AT5G52420			unknown protein		Lus10039249 [exp]	14.5	0.7857
AT2G37960			unknown protein		Lus10027749 [exp]	15.0	0.7473
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10026067 [exp]	15.0	0.7836
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	15.8	0.8235
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	16.7	0.7863
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	20.3	0.8097

Compare expression of checked genes

Lus10014952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.