Plant FIBer expression Database

Lus10014953 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52800 670 / 0 DNA primases (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038837
[exp]
1137 / 0 AT5G52800 655 / 0.0 DNA primases (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G148000
[exp]
756 / 0 AT5G52800 656 / 0.0 DNA primases (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03121 Herpes_UL52 Herpesviridae UL52/UL70 DNA primase
Representative CDS sequence
>Lus10014953 pacid=23152795 polypeptide=Lus10014953 locus=Lus10014953.g ID=Lus10014953.BGIv1.0 annot-version=v1.0
ATGGCGGAGCAGAAGTCGTCGGAGGCCATGGACGACGTGGATCGCTTATTCCAGTGCTTCAAGTGCGGAGTAGAACCTCCACAGTCTGCTGTGCGAGAGA
GGAAACGGAGCAAGAGCAAATCGAGGCAAGGGAGCGGAGTACTGCTTGATGCTTCATCGATCTGCGGCGGCACTCCGTCTCCCGGATCAGCTGAGCCGCG
GAAGAAGATCGCGACGGATGCGGGTTGTTCAACATCCAAAGCCGATAAGTTAAGATGTGGCAAGATTTCTCCAGTAGTGTTTTACGGATCTCCTAATGGT
GTGCCTCCTAAAAGACCAATCAGTTTGCTGCGACTGTTGAGGGAAATACGAGTCGATCTTTCAGAACAAGGAAAAGAGAACTTGAGGAAGGAGGTATGGG
CTACATTTCCGAGACAGAATGAAGCTATGAACTTTGCGAAAGAGCACAACAGCGTCCGTGTTTTCAGCTATCAAGATCATATCCATGGGCAGAGAAGGTT
CCTCGTTTCGACATACCACGAGTTCTGGAAAAGGTATCAAAACATGGGCTCGAAATTTCGACATCATTACGAAGTAATTCAAGAGGGGTTACCATGCCAT
CTATACTTTGATTTGGAGTTCAATAAGAAAGACAATGTACAGAAGAACGGGGACGAAATGGTGGATCTCTTGATATCAGTCATTTTTAAATTATTGAATG
AGAAGTATTCAATCGAAGGAAGTGATGATTGGATTGTGGAGCTTGATTCTTCTACTACAGAGAAGTTCTCACGTCATCTAATCCTCCGCATACCAAAGGC
TGCGTTTAAGGACAATTCCCATGTTGGTTCGTTTGTTTCAGAGGTATGCTCCCGGATCTCAAGTTTAAAACACAAGGACGAAAGATACAAGACATTATAT
ATCAGAAAGGACTCGAACTCTACTGAACCTCCAACCCATCTGTTCATCGACACTGCCGTTTACACTAGAAACCGTTGCTTTCGCTTGGCTCTTTCATCAA
AGGCAGGAAAAACGTCGTTTCTTGTGTCCACAGAGCGCTTCAAATGTAAAACCATGTGTGAAGAAGACATGTTCATGGCTTCCTTGATCTGCAATGTCGA
CAGCGACACCGACAGGCTGCTCGTCTGCAAAATGGATATGGAGTGTGTTAAGAAGTTGCACTTTGATACTGAGGTGAACTATAATGCCACCAGATTCAGT
AGGCCTCGAGAACTGTCAATGACGACGAATGGAAGTTCTCGAGACGCTACGATGACATCTTCCAACGAGGGGAAGTCGCCATTCCCATCTTTGGACAAAT
TCGTCGAGTGTATTGCCTCGACTGGAAGTACATCAGGTAAAATACGAAGCTGGTATTGGTTCTCGGAGGATGGATTGATGGTGTACAGCATGTCAAGGAA
TCGATACTGTGAACGAATCGGCAGAGAGCATAAAAGTAATCACGTTATCTACGTGGTTGATTTGAGATGGGGCTTCTACTACCAAAAATGCCACGATCCA
GATTGCCAAGGTTACAAGTCTCCCTTTCGTCCAGTACCAATTGACATGATCCCGAATGATCCACCTAGCCGCGACATCAAACAGACATCGTTGGATCGGA
TGAATGATTCCGTCGAATACCAACAGAACGAAGGATGCGGTAGTATTGGTAAAGATTCTTGGTGGCTTGAAGCTATGCGAGTTGCCGACGACATCGAAAT
GAAAAGGAGCGATGGACTACTTACCCACATGAATGAGATTGACGAGGACGATGAAATGTGGTGGGTAGCCGTTGAAATAAGTGTGTCTCAAGCTGAGTTA
ATGCACACTTCACTTCAAATATAG
AA sequence
>Lus10014953 pacid=23152795 polypeptide=Lus10014953 locus=Lus10014953.g ID=Lus10014953.BGIv1.0 annot-version=v1.0
MAEQKSSEAMDDVDRLFQCFKCGVEPPQSAVRERKRSKSKSRQGSGVLLDASSICGGTPSPGSAEPRKKIATDAGCSTSKADKLRCGKISPVVFYGSPNG
VPPKRPISLLRLLREIRVDLSEQGKENLRKEVWATFPRQNEAMNFAKEHNSVRVFSYQDHIHGQRRFLVSTYHEFWKRYQNMGSKFRHHYEVIQEGLPCH
LYFDLEFNKKDNVQKNGDEMVDLLISVIFKLLNEKYSIEGSDDWIVELDSSTTEKFSRHLILRIPKAAFKDNSHVGSFVSEVCSRISSLKHKDERYKTLY
IRKDSNSTEPPTHLFIDTAVYTRNRCFRLALSSKAGKTSFLVSTERFKCKTMCEEDMFMASLICNVDSDTDRLLVCKMDMECVKKLHFDTEVNYNATRFS
RPRELSMTTNGSSRDATMTSSNEGKSPFPSLDKFVECIASTGSTSGKIRSWYWFSEDGLMVYSMSRNRYCERIGREHKSNHVIYVVDLRWGFYYQKCHDP
DCQGYKSPFRPVPIDMIPNDPPSRDIKQTSLDRMNDSVEYQQNEGCGSIGKDSWWLEAMRVADDIEMKRSDGLLTHMNEIDEDDEMWWVAVEISVSQAEL
MHTSLQI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G52800 DNA primases (.1.2.3) Lus10014953
[exp]
0 1
AT5G65120 unknown protein Lus10016802
[exp]
1.7 0.9297
AT5G12920 Transducin/WD40 repeat-like su... Lus10031823
[exp]
2.4 0.9241
AT3G54560 HTA11 histone H2A 11 (.1) Lus10024838
[exp]
4.0 0.9293
AT5G63540 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, D... Lus10016747
[exp]
11.5 0.8402
AT2G16440 MCM4 MINICHROMOSOME MAINTENANCE 4, ... Lus10017491
[exp]
12.0 0.9233
AT1G61000 unknown protein Lus10020820
[exp]
14.5 0.8959
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Lus10028044
[exp]
14.7 0.9070
AT4G37630 CYCD5;1 cyclin d5;1 (.1.2) Lus10018688
[exp]
15.1 0.8601
AT3G57060 binding (.1.2) Lus10039012
[exp]
16.1 0.9165
AT4G21070 ATBRCA1 ARABIDOPSIS THALIANA BREAST CA... Lus10036151
[exp]
16.6 0.9096

Lus10014953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.