Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52530 45 / 0.0001 dentin sialophosphoprotein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038838 [exp] 793 / 0 AT5G52530 70 / 2e-11 dentin sialophosphoprotein-related (.1.2.3) Lus10014955 [exp] 672 / 0 AT5G52530 49 / 1e-05 dentin sialophosphoprotein-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079000 [exp] 93 / 2e-19 AT5G52530 122 / 4e-28 dentin sialophosphoprotein-related (.1.2.3) Potri.017G142600 [exp] 87 / 9e-18 AT5G52530 84 / 3e-16 dentin sialophosphoprotein-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014954 pacid=23152777 polypeptide=Lus10014954 locus=Lus10014954.g ID=Lus10014954.BGIv1.0 annot-version=v1.0 ATGTCAAGTACAAAGCAAGGAGCGATTGTGTCAAGCAAGCCTTCCAGTAGCAAATCGTCTATGACCGGGAAAAAAATTATAGGGTCTGTAGGCGGGATGC GTAAAGTGGGTTTGGAACTCGAGAATTTTATTAATCCCGAGTTAACTTGGAAGTCTATAGCTAAAGGATATAGGAGTTCTTCAAGGCGGGCTAGGAGGCA TGCTCTCAGAAATTTTGTTGCTGGGGAGAAGCTATCAGTGCAAGGATCAATGAAGGTGGAAGAGGGAACAGCTTCAGATACAGAGAAGGTAAATTTTTTG TTTCCTGCCATTTCACGTATTGCCTACATGATTGAAGTGTTACAGTTTTTTCCAAAACATACTAACCGAAACTACTCTTACCAGCATGGGGTGGCCATTC TTGGGCGACGTTTTAGTGACAAAATAGCGGATATTCCGTTGAAGAAACGTAGGGTTATGCTTTGTTCTCCCTCGCCTTCACCTAGATCCCATCAAGAAGC CTCTAAACTTGGCTCTTACAGTGAGAAGCTATCGAAGGCAGGTGAAGATTCTGCAAAGGTTGATACTCAACAGAAGAGTGAAGACTTCTCCGGTTTGGAG ATACTTGCAGCTGTAGTGACTGGCGAAGTTGATAATGGTCATTTGTGGTCAGTTGTCCTATCAACTAGAGACAGAATAGGCTCATCTCCTAAAGACAATG CTGGTGAAGGAAAGGGCCAGGGATCATCTTTGCTGGAGCAAACCGGAGCTGTTTTGCTGAAATCTCATATAAAAAAAGAAATTGGATTTGGCGAGGGATC TGGATCTGTAAAAGATACTAGACCGCTCTGGGACCTGAATGTTCCTGCAGATGCCTGGGAAAACTCTAGTCATTCCTGTGCAATGGGCAGTCATGTAAAT GCATCAACTTGTTTGCTTTCAGAAACAGAGGAAAGGGTGGAGTTTCTGAATAATTCTAAGGTAAATGTGGAATGTAAGAAAACTCAGAACTCCGTTGTGG ATAGTGTGTTAGAAGATGCCAAGGAGCCTTTCACTGTCTCTGCAGATACAAAAGAGTCGTTGACTGCGATTAATGAAGCTAGCAATAGACAGAATGGATT TGACAACTCTTCAGAGCTTGACAGGAACAGTAAGGGCTTTGTCTGTTCAGCTGCAGACGTGAAGGATTCTTGTAAGATTGCTGGCGCCATCTGTTCTCTT GATCATTTGGATCCTGCTAAGATTTCTGCGGATGATAGGATTGCTTACCCTACAATTAGAGGGGTAAGCAAAGCTCTTTCTTCTGATGGTACACCTGCAA ACGTTTTGGCTATGGGAGATGGTTCAGATGATAGTTATGGCTCTGATGTTTATCAAACGGAGAAGGTGGATATGAACAGCACTGAGAGAGGTGAAGAGCT TTTAGGTGGTTATGATTCTCAGTTCGAGGATGGAGAGTTGAGAGAAGCTGACGCACCTTACTATTCGGACAAAAATGGAGGCGAGGACGGGGAAGTCGAG CAAGTAGACTATGGCTCGGAATGCGATGAGGGTGTCCTCGGGTTGACGCAAGTGAAGGAAGTGGAGGCTGAAAGAGCGTAA
AA sequence Show only first row Show all	>Lus10014954 pacid=23152777 polypeptide=Lus10014954 locus=Lus10014954.g ID=Lus10014954.BGIv1.0 annot-version=v1.0 MSSTKQGAIVSSKPSSSKSSMTGKKIIGSVGGMRKVGLELENFINPELTWKSIAKGYRSSSRRARRHALRNFVAGEKLSVQGSMKVEEGTASDTEKVNFL FPAISRIAYMIEVLQFFPKHTNRNYSYQHGVAILGRRFSDKIADIPLKKRRVMLCSPSPSPRSHQEASKLGSYSEKLSKAGEDSAKVDTQQKSEDFSGLE ILAAVVTGEVDNGHLWSVVLSTRDRIGSSPKDNAGEGKGQGSSLLEQTGAVLLKSHIKKEIGFGEGSGSVKDTRPLWDLNVPADAWENSSHSCAMGSHVN ASTCLLSETEERVEFLNNSKVNVECKKTQNSVVDSVLEDAKEPFTVSADTKESLTAINEASNRQNGFDNSSELDRNSKGFVCSAADVKDSCKIAGAICSL DHLDPAKISADDRIAYPTIRGVSKALSSDGTPANVLAMGDGSDDSYGSDVYQTEKVDMNSTERGEELLGGYDSQFEDGELREADAPYYSDKNGGEDGEVE QVDYGSECDEGVLGLTQVKEVEAERA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014954 [exp]	0	1
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	2.0	0.9312
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	4.9	0.9298
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10042134 [exp]	5.7	0.9200
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	6.3	0.9236
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006377 [exp]	6.7	0.9287
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	6.9	0.9391
AT1G51350			ARM repeat superfamily protein...		Lus10027364 [exp]	7.7	0.8905
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10040315 [exp]	8.8	0.9189
AT3G51650			unknown protein		Lus10009098 [exp]	11.9	0.8978
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	13.0	0.9299

Compare expression of checked genes

Lus10014954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.