Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038838 [exp] 1839 / 0 AT5G52530 70 / 2e-11 dentin sialophosphoprotein-related (.1.2.3) Lus10014954 [exp] 670 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079000 [exp] 107 / 3e-23 AT5G52530 122 / 4e-28 dentin sialophosphoprotein-related (.1.2.3) Potri.017G142600 [exp] 93 / 7e-19 AT5G52530 84 / 3e-16 dentin sialophosphoprotein-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014955 pacid=23152835 polypeptide=Lus10014955 locus=Lus10014955.g ID=Lus10014955.BGIv1.0 annot-version=v1.0 ATGTCAAATACGGAGCAAGGAGCGATAGTGTCATGCGAGACTTCCAGTAGCAAATCGTCTGTGAACGGAAAAACAATTATAAGGTCTCCAAGTAAAGAGG GTTTGGAACTCGAGAATTTTATAAATCCCGAGTTAACTTGGAAGTCTATAGCTAAAGGATATAGGAGTTCTTCAAGGCGTGCTAGGAGGCATGCTCTCAG AAATTTTGTTGCCGGGGAGAAGCTATCAGTGCAAGGATCAATGGAGGTGGGGGAGGGACCAGCTTCAGATACAGAGATGCATGGGGTGGCCATTCTTAGG CGACGTTTTAGTGACAAAATATGGGATATTCCGTTGAAGAAACGGAGGCTTATGCTTCGCTCTCCCTCGCCACCACCTACATCCCATCAAGAAGCCTCAA AACTTGACTCTTTAAGTGAGAAGCTATCGAAGGCAGGTGAAGATTCTGCAAAGGTTGATACTCAACAGAGGAGTGAAGACTTCTCCGGTTTGCAGATACT TGCAGCTGTAGAGACTGCCCAAGTTGATAATGGTAATTTCAGGTCAGTTGTGCTATCAATTAGAGACAGAGTAGGCTCATCTCCTGAAGACAATGTTTGT GAAGCAAAGGGCAAGGGATCATCTTTGAGTGATGGGAATGGGAATGCTGAGGGAAGTGGAGAGAAGAAACCCGAAGAGGTTATGGAAGGCAGCAGCGAAA CAGATGTATCAGAGACATCAACAGAGCAGAAGGAGCTGGAGCAAACAGGAGTTGTTTTGCCGAAATCTCCTATCAATAAGGAAATTGGATTTGGGGAGGG ATCTGGAGCTGTAAAAGATACTAGAATGCTCTGGGACCTGAATGTTCCTGCAGATGCCTGGGAAAACTTTAGTCAATCCTGTGCAATCGGCCTCCATGTA AATGCATCAACTTGTTTGCTTTCAAGAACAGAGGAAAGGGTGGAGGTTTTAAATAATTCTCAGGTAAATTTGGAATGTAAGAAAACTCAGAACTCCGTTG TGGACAGTGTGTCAGAAGATGCCAAGGAGCCTTTCACTGTCTCTGCAGATACAAAAGAGTCGTTGCCTGAGATTCATGAAGCTAGCAATAGACAGGATGG ATTCGACAACTCTGCGGAGATTGACAGGGATAGTGAGAGCCGTGTCTGTTCAGTTTCAGACGCGAAGGATTCCTGTAAGATTGCTGGCGCCACCTGTTCT CTTGATCATTTGGATCGTGCTAAGATTTCTGCGGATGATGGGAATGCTTGCCCAAAAATCAAAGGCGTAATTAAAGCTCTTTCTTCTGATGGTACACCTG CAAAAGTGTCTTCTACGGGAGATACTTTGGATGATAGTTATGGCTCTGATGTTTATCAAACGGAGAAGGTGGATATGAACAGCACTGAAAGAGGTGAAGA GCTTTTGGATGGTTATGATTCTCAGTTTGAGGACGGAGAGTTGAGAGAAGCTGATGCACCTTACTATTCAGATAAAAATATAGGGGAGGACAGGGCAGTC AAGCAAGTCGACTATGGCTCTGGATCTGATGATGGTATCCTCGGGTTGATGCCAATGAAGGAAGTGGAAGCTGAAAGATTGTCAACCCCAGCATCTTGTG AAACCACCAGAAAACCTGAAATTAGTAATGCCGAAATGGGTACTGCAAGAGACGATTCCACAAGCTTGGAAAGCAGTGATAAAGGTTTGCCTCCTGGTTT TGTTGGAATAGGGAGCAGTCAGGTCGACGAGTCTGCATCATTTATTGATGGGCAAGTCGACTATGGATCCGAATGCGATGAGGGTCTCCTCGAGTTGATG CAAGTGAAGGAAGTGGAAGCGGAAAGATTGTCAACCCCAGGATCTTGTCAAACCACCAGGAAAACTGAACTTAGTAATTGCGAAATGGGCACTGCAAGAG AAGATTCGGCGAGCACAAAAAGCAGTGATAAAGGTTTGCCTGCTGGTTTTGTTGGAATAGGGGGCAATCAGGTCGACGAGTCTGCCTCATTTATCAATGG GCCACCAGAGGCCATGTGGAGGAACAGGTCAGAAAATTGTCGCAACTTATTCCCACGAGATGAAGCCGATGTTCGTCCTAAACGATACTTTGGGAGGGAC AGACATTTTGATCGATCTACTGCTAACTGGAACTTGGAGCGACGTTACTCTCCAAATCGGGCTGCACATACTTATGATCGTCCTAGGCCAAAAGGCTTTG TTGAAGGAAGAAGATTTATGATGCCATCGGACCGGATGGATTCCCAGACACAACGGTTTGTTGGATTTGAGAATCGGGTCAGTAGACAATTTGCAAACTC CCGTGAACACATAATGAGACGGCAGTCGCCTAGTTTTAGGGGAGAGGATTCTTATGGCCCGAATCCGAGGATGTTTCCGCCGCGAGAGATGAGTCCAGAA GCAAGGAATCAGTTTCGAAGATTTCCGAACTCTAGGGGTAGCATCAGGGAAGCAGAAGAGTTCATGAATTCTTTCCCAGCGGATGCTACTAATCACTATT CTGGCTATAACGCATTTTCGGAAAGAGACAGAAGTATTTCCCCTGGATTTGAGAATCGAGTCGGTAGGCAATTTGCAAACTCCCGTGAACACATAATGAG AAGGCGGTCACCTGGTTTTACAGGCAAGGATTCCTATGGCCTGAATTCGAGGATGTTTCCGCAGCGAGAGATGTCTCCACAAGAAAGAAATCAGTTTCGG AGATTTAGGGGCAGCATCAGGGAAGAAGAGTTTAGGAATTCCTTCCCAGAAGTTGGCTACAACGGTTTATCCAAAAGAGATAGAAGTATTTCCCCGCAAC CGCACGGACGCCCCCCGTATTCAAGGTCGAGATCAAGGTCAAGGATACGATCGCCACCAAATTACTTACAGCAAAGGGAACAACGGGATGTTGATGGTTC GCTGATGCGCAGTAGGTCCCCTGGGTCGAACAGAGGAGTGAGAATTCCTTTTCAGAAGCGTTTCACAGCTAGATACGAAGACCGTGACCAACCGAGACGT CAATTTCAACCTAACCACATGAGGCCGTTTGATGATCGTAGTGGTGGTGGCTTTGTCGATTTTAGAGCAAGGAAATCGCCTGTCAGGATGTACCACCAAC GTCAGCCGCAGCAGGGTAACAACAGATTCGATTCAATTCGGGGAAACAACAGCGACGAATTCAGACCGGTTATGCAACAACAGCCTGGAGACTTTCGCGA CGCTCGCCACAGGTTTGAGATGTCTCGAAACAATGCAGCAGCAGCAGCAGCAGGGGAGGAAGCTCCCCCGTAA
AA sequence Show only first row Show all	>Lus10014955 pacid=23152835 polypeptide=Lus10014955 locus=Lus10014955.g ID=Lus10014955.BGIv1.0 annot-version=v1.0 MSNTEQGAIVSCETSSSKSSVNGKTIIRSPSKEGLELENFINPELTWKSIAKGYRSSSRRARRHALRNFVAGEKLSVQGSMEVGEGPASDTEMHGVAILR RRFSDKIWDIPLKKRRLMLRSPSPPPTSHQEASKLDSLSEKLSKAGEDSAKVDTQQRSEDFSGLQILAAVETAQVDNGNFRSVVLSIRDRVGSSPEDNVC EAKGKGSSLSDGNGNAEGSGEKKPEEVMEGSSETDVSETSTEQKELEQTGVVLPKSPINKEIGFGEGSGAVKDTRMLWDLNVPADAWENFSQSCAIGLHV NASTCLLSRTEERVEVLNNSQVNLECKKTQNSVVDSVSEDAKEPFTVSADTKESLPEIHEASNRQDGFDNSAEIDRDSESRVCSVSDAKDSCKIAGATCS LDHLDRAKISADDGNACPKIKGVIKALSSDGTPAKVSSTGDTLDDSYGSDVYQTEKVDMNSTERGEELLDGYDSQFEDGELREADAPYYSDKNIGEDRAV KQVDYGSGSDDGILGLMPMKEVEAERLSTPASCETTRKPEISNAEMGTARDDSTSLESSDKGLPPGFVGIGSSQVDESASFIDGQVDYGSECDEGLLELM QVKEVEAERLSTPGSCQTTRKTELSNCEMGTAREDSASTKSSDKGLPAGFVGIGGNQVDESASFINGPPEAMWRNRSENCRNLFPRDEADVRPKRYFGRD RHFDRSTANWNLERRYSPNRAAHTYDRPRPKGFVEGRRFMMPSDRMDSQTQRFVGFENRVSRQFANSREHIMRRQSPSFRGEDSYGPNPRMFPPREMSPE ARNQFRRFPNSRGSIREAEEFMNSFPADATNHYSGYNAFSERDRSISPGFENRVGRQFANSREHIMRRRSPGFTGKDSYGLNSRMFPQREMSPQERNQFR RFRGSIREEEFRNSFPEVGYNGLSKRDRSISPQPHGRPPYSRSRSRSRIRSPPNYLQQREQRDVDGSLMRSRSPGSNRGVRIPFQKRFTARYEDRDQPRR QFQPNHMRPFDDRSGGGFVDFRARKSPVRMYHQRQPQQGNNRFDSIRGNNSDEFRPVMQQQPGDFRDARHRFEMSRNNAAAAAAGEEAPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	0	1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	2.2	0.8766
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10005022 [exp]	3.7	0.8116
AT3G50910			unknown protein		Lus10014290 [exp]	5.3	0.8389
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	6.9	0.8030
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	7.7	0.8143
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	9.8	0.8372
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Lus10019041 [exp]	12.6	0.7762
AT4G18490			unknown protein		Lus10034597 [exp]	13.1	0.8029
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	14.4	0.7861
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	15.2	0.8189

Compare expression of checked genes

Lus10014955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.