Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13230 462 / 3e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 377 / 1e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 375 / 1e-123 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 373 / 2e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 357 / 8e-116 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 353 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 348 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 342 / 7e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G27610 353 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39680 349 / 2e-114 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038839 [exp] 733 / 0 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 370 / 7e-123 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 370 / 7e-123 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 365 / 9e-119 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 351 / 3e-116 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040577 [exp] 343 / 5e-116 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 360 / 4e-115 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 342 / 3e-114 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 345 / 1e-113 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G164900 [exp] 577 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 375 / 6e-124 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 365 / 6e-122 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 364 / 4e-121 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G058900 [exp] 374 / 1e-120 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 362 / 2e-120 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 365 / 3e-120 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G065500 [exp] 360 / 1e-119 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 364 / 2e-118 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 359 / 2e-118 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014956 pacid=23152743 polypeptide=Lus10014956 locus=Lus10014956.g ID=Lus10014956.BGIv1.0 annot-version=v1.0 ATGGTCGAATGTCGTGATATCCAAGCCACTGAAGTAACATACTCCAGCGCTCTTCGTGCTTGTGCTAGTCTAGCAGCATTGGAGCTAGGAACTCAGATTC ATTGCCTGTCTGTGAAAACAACATACGACAAGAACACAGTAGTCGGCAATGCTTTGATAGACATGTACGCAAAGTGTGGTGGAATCAAAGATGCTCGTGT AGTATTCGACAGTTTAAGCAAGAAAAACGATGAGGTTTCCTGGAATACTATGATATCAGGGTACTCCACCCACGGCCTTGCTGAGGAAGCTCTCCGAGTT TTCGACTCGATGCTAGAAAGTGGGGTCACCCCTAATCAGATGACTTTCGTTGGAGTGCTATCGGCGTGTAGTAACAATGGATTGCTCGATAGAGGAGAAG CTTATTTCAACTCCATGATAGAGGATTACGGTATTAAGCCGTGTATGGAGCATTACTCTTGTATGGTATGGTTATTAGGAAGGTCAGGCCATCTACACCG GGCTTTTAAGTTGATACAAGAAATGCCGTTGGAGCCGAGTCTTATGGCTTGGCGTGCCTTACTCGGTTCGTGTGTCATCCACAACGATACCGAGCTAGGA AAGCTCTGTGCTCAGCACATTCTTGAGATCGAACCCGAAGATGATTCGACTCACGTATTGCTGTCGAACATGTACGCGAGAACCGGTCGCTGGGGGCAGG TCGCTTCCGTTCGAAGAAGCATGAAAAGCAAAGGAGTCATCAAAGAGCCCGGGTTGAGCTGGATTGAGAACCAAGGGGTTGTTCATTATTTCACTGTGGA TGACGTGTCACATCCCAACCTGAAACTAATGTACGGAATGCTGGAGTGGCTAAACATGAAAGCCAGGCAAGAAGGTTACAGCCCTGATTATAATGTTGTT CTACGTGACATCGAGGATGGTCGAAAGGAGCGGCATTTGTGGCTGCACAGTGAGAGACTGGCTCTGGCTTTCGGTCTAATCCGAACGCCGGGGAGAAGAA GTCCCATCCGGATTATAAAGAATCTTCGTATCTGTGCAGACTGCCATGCTGCTATGAAATTGATCTCCAAGATTGTGAAGCGTGATATTGTTGTAAGGGA TATGAATCGGTTCCATCACTTTGAAAATGGGACTTGCTCTTGTGGTGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10014956 pacid=23152743 polypeptide=Lus10014956 locus=Lus10014956.g ID=Lus10014956.BGIv1.0 annot-version=v1.0 MVECRDIQATEVTYSSALRACASLAALELGTQIHCLSVKTTYDKNTVVGNALIDMYAKCGGIKDARVVFDSLSKKNDEVSWNTMISGYSTHGLAEEALRV FDSMLESGVTPNQMTFVGVLSACSNNGLLDRGEAYFNSMIEDYGIKPCMEHYSCMVWLLGRSGHLHRAFKLIQEMPLEPSLMAWRALLGSCVIHNDTELG KLCAQHILEIEPEDDSTHVLLSNMYARTGRWGQVASVRRSMKSKGVIKEPGLSWIENQGVVHYFTVDDVSHPNLKLMYGMLEWLNMKARQEGYSPDYNVV LRDIEDGRKERHLWLHSERLALAFGLIRTPGRRSPIRIIKNLRICADCHAAMKLISKIVKRDIVVRDMNRFHHFENGTCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	0	1
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	1.0	0.8439
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	1.4	0.8057
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	2.8	0.7597
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022702 [exp]	6.7	0.7772
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	6.9	0.7548
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	8.1	0.7580
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	8.8	0.7384
AT4G39470			Tetratricopeptide repeat (TPR)...		Lus10035707 [exp]	10.4	0.7106
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10015182 [exp]	14.7	0.6406
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	18.4	0.6895

Compare expression of checked genes

Lus10014956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.