Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23980 608 / 0 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G01580 521 / 7e-177 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G01590 503 / 5e-170 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT1G23020 492 / 1e-165 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 484 / 2e-163 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 257 / 1e-75 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT5G49740 251 / 3e-73 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT5G49730 246 / 2e-71 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT1G19230 96 / 4e-20 Riboflavin synthase-like superfamily protein (.1.2) AT4G25090 93 / 2e-19 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039268 [exp] 499 / 1e-168 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 494 / 4e-166 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036379 [exp] 480 / 5e-161 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10027507 [exp] 305 / 5e-90 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10007586 [exp] 271 / 8e-81 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10019488 [exp] 262 / 2e-77 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10012161 [exp] 251 / 7e-75 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10032308 [exp] 93 / 3e-19 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 93 / 3e-19 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142800 [exp] 744 / 0 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 724 / 0 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.014G088000 [exp] 541 / 0 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.004G079100 [exp] 497 / 8e-168 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 489 / 1e-164 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.015G083200 [exp] 264 / 3e-78 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.001G079000 [exp] 251 / 1e-73 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.012G084800 [exp] 247 / 6e-72 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.003G133300 [exp] 93 / 2e-19 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 91 / 2e-18 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10014957 pacid=23152802 polypeptide=Lus10014957 locus=Lus10014957.g ID=Lus10014957.BGIv1.0 annot-version=v1.0 ATGAGAAATTCGAGCATTGTTACAAGAGTAATCTTGCTTGTGTGTTTTCTGGTATGGCTGGTGATTTGGGTTATGTTACCCACAAAGGTTTACAAAGATT CATGGAATCCAAACCTGTCCTCCACCGCCTTCAACTCTTCCTACTTCGAAGCTCAAGGTACAAACCTTGTGCTATTTACCTTCCCCATCATGCTCATAGC CGTACTGGGATCCATTTACCTCCATTTCCAAACCAAAGTCGAGAACCCAACTCTCGAAATACCATCCAAAGGATCAGCAGCCAATCAGAGTTCAGGCAAT AATCCATGGACACGTGTCCTGGTGATTTCACCGCTGGGTATAGTCACTCTAACCGAGCTAGCCTTTGTGGCGATGTTCGTAGCACTTCACGTTTGGTCGC TCGCCAATTACTTGTACGTCAGCTTTGGGCACCTCCACATGCACGACGATGGAGCCTCCGTGTGGCAGGCCAAGTTCAGGAGTGTGTCGTTGAGGCTAGG GTACATAGGGAACATAAGCTGGGCGTTTCTCTTCTTCCCAGTGACTAGAGGCTCCTCGTTGCTCCCACTTGTAGGGCTAACATCAGAGTCGAGCATCAAG TATCATATCTGGCTTGGCCATTTCTCCAATGTCCTCTTCTCTTTGCACACCGTTGGATTCATCGTGTATTGGGCCATGACTAACCAGATGGCTCAGATGT TGGAGTGGAGCAGAAGCTGGGTATCGAACGTAGCGGGAGAGATAGCAATGGCGATAGCCGTAGTCATGTGGGTGATGAGCTCGGCTCGAGTTAGGCGAAA GGCCTTCGGCGTCTTCTTCACCACTCACCATCTCTACATCTTGTTCATCCTGTTCTACCTCCTCCACGTCGGCGCGGCCTACGCTCTGATGATCCTCCCT GGGATCTTCCTCTTCACCGTTGACCGTTGCTTAAGGTTCTTGCAGTCTCAGAACAGAGCTCGACTCGTCTCGGCTCGTTTGCTCGCTGGGTGTGGAACCC TAGAGCTCACCTTTTCCAAGTCCGCAGAGTTGCGGTACAATCCAACGAGCATAATCTTCATAAACGTGCCAACAATCTCCAAGCTACAATGGCATCCTTT TACAGTAACTTCCAACAGTAACCTACAACTCGATCAACTCAGCATCGTTGTAAAGAGCGTTGGCGACTGGTCTCAAAAGCTATACCAACAAATCTCGGTC TCTTCCCCCGATCGACTTGAAATCTCGGTTGAAGGACCCTACGGTCCAATCTCGCCCGATTTTCTAAGGCACGATGTTTTGGTGCTTATCAGCGGGGGCA GCGGAATCACACCTTTCATATCCATAATCCGCGAGTTCATCTTCGAAACAACCTCGAATTCTAATCTCGAAACTCGACCCGAAATCCTTTTGATTTCGGC TTTCAAGAACTCGACTGATCTCGCGATACTCGACCTCCTCCTTCCGGCCGATAGTACACTCGAACATTTCCCCAAGTTAAACCTCCGGATCGAAGCTTAC ATTACAAGAGAGAACGATCCACCAATCATGGAAACTACCCCAGCCTCGACCGAGACACATGATCATGACCGCCCGGTTCAAACCAAAAGGTTCAACCCAG CCCGATCAGACTCGCCCATCTCCGGAACCCTAGGACCGGAGTCCTGGATCTGGCTTGCGGGGATAATCGCATCCTCTTTTGCAATGTTCGTCCTCTTGCT CGCCATCGTCACTCGAGTTTACATCTACCCGATCGACGGTGGCGCCCTGGAGGGAGCGTACCATTTCTCGTATTTCGTCCTGTGGGATGTTTTCCTCGCC TGCGGGAGCATTTTCACGGTGTGTTCCGTAGGGTTCTTTGTCAAGAAGCGGAGTTCGACGGAAGTTAATAGAGTGAATGATCTCGAGATGGAAGCGGTGG AGGCGGCGGCGGTGGTTGGAGAGGTGGAGAGCGCTCCGAGTCAGTGGGTTAGTGGAGCCACCAAGGTTCATTTCGGTCATCGACCTGACCTTAGGGGTAG GTGA
AA sequence Show only first row Show all	>Lus10014957 pacid=23152802 polypeptide=Lus10014957 locus=Lus10014957.g ID=Lus10014957.BGIv1.0 annot-version=v1.0 MRNSSIVTRVILLVCFLVWLVIWVMLPTKVYKDSWNPNLSSTAFNSSYFEAQGTNLVLFTFPIMLIAVLGSIYLHFQTKVENPTLEIPSKGSAANQSSGN NPWTRVLVISPLGIVTLTELAFVAMFVALHVWSLANYLYVSFGHLHMHDDGASVWQAKFRSVSLRLGYIGNISWAFLFFPVTRGSSLLPLVGLTSESSIK YHIWLGHFSNVLFSLHTVGFIVYWAMTNQMAQMLEWSRSWVSNVAGEIAMAIAVVMWVMSSARVRRKAFGVFFTTHHLYILFILFYLLHVGAAYALMILP GIFLFTVDRCLRFLQSQNRARLVSARLLAGCGTLELTFSKSAELRYNPTSIIFINVPTISKLQWHPFTVTSNSNLQLDQLSIVVKSVGDWSQKLYQQISV SSPDRLEISVEGPYGPISPDFLRHDVLVLISGGSGITPFISIIREFIFETTSNSNLETRPEILLISAFKNSTDLAILDLLLPADSTLEHFPKLNLRIEAY ITRENDPPIMETTPASTETHDHDRPVQTKRFNPARSDSPISGTLGPESWIWLAGIIASSFAMFVLLLAIVTRVYIYPIDGGALEGAYHFSYFVLWDVFLA CGSIFTVCSVGFFVKKRSSTEVNRVNDLEMEAVEAAAVVGEVESAPSQWVSGATKVHFGHRPDLRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	0	1
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	1.0	0.9645
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	3.2	0.9452
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	5.7	0.9439
					Lus10033847 [exp]	7.1	0.9394
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	7.9	0.9206
AT1G53540			HSP20-like chaperones superfam...		Lus10017202 [exp]	8.5	0.9380
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	9.2	0.8715
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10010362 [exp]	9.8	0.9423
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10040694 [exp]	10.1	0.9005
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	11.0	0.9182

Compare expression of checked genes

Lus10014957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.