Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52545 54 / 3e-10 unknown protein AT5G03580 50 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G16380 52 / 5e-08 PAB6 poly(A) binding protein 6 (.1) AT2G36660 50 / 3e-07 PAB7 poly(A) binding protein 7 (.1) AT1G71770 47 / 3e-06 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G27330 44 / 5e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 45 / 1e-05 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT1G01080 45 / 1e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G73530 44 / 2e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G34110 44 / 2e-05 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038840 [exp] 323 / 2e-114 AT3G16380 62 / 2e-11 poly(A) binding protein 6 (.1) Lus10025075 [exp] 49 / 8e-07 AT2G16940 565 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10034466 [exp] 48 / 1e-06 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10000826 [exp] 48 / 2e-06 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10020123 [exp] 46 / 2e-06 AT4G31580 188 / 2e-61 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10026925 [exp] 46 / 2e-06 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10002093 [exp] 47 / 3e-06 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10035556 [exp] 47 / 4e-06 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10002835 [exp] 45 / 1e-05 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079400 [exp] 212 / 2e-70 AT5G52545 79 / 1e-19 unknown protein Potri.009G137200 [exp] 47 / 3e-06 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.005G148100 [exp] 46 / 5e-06 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.012G038200 [exp] 45 / 5e-06 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G177000 [exp] 46 / 6e-06 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.006G272400 [exp] 44 / 1e-05 AT2G24590 152 / 4e-47 RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.018G009100 [exp] 44 / 1e-05 AT4G31580 174 / 2e-55 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Potri.001G304000 [exp] 44 / 2e-05 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.019G050600 [exp] 44 / 2e-05 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4) Potri.007G009800 [exp] 44 / 3e-05 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014958 pacid=23152794 polypeptide=Lus10014958 locus=Lus10014958.g ID=Lus10014958.BGIv1.0 annot-version=v1.0 ATGGATCACAACGGTTTCACTGATGAGAAAGCAGAGAGCAGAGTTTATGTTGGAAACCTTGACCTTAGAATAACAGAGGCGACTCTGATCAAGATGTTTT CCCCGTACGGTACGATCATTTCGGAGGACTTCCTGTGGCATACCCGTGGCCCTAAACGTGGGGAGCCACGTGGTTTCGCGTTCGTCCAGTTCAGCTCCAA AGAGCAAAACGGTCTTCTGATGCCCACGTATAAAGTGAGAATGCAGGAAGCTAGATTAGCCAAGGAAAAGATGCACGGAAGGCTAGCTTGTGGCCGTCCA TTGGTGGTACGTGTTTCCACCGAGCAAAACAACAACGATCAATCATCAGCGCCTCAAGGCTCTTCGAGAACAGCCAGGGAGACTAAGAAACCAGGAGGCC TCCATCTCCTTGCTTCTTCTTCACGTACGGCGGGGCAGAAGAAGACGAGCAAGAGTGCGAAAATCGCAGCGATGAAGAACAAGTTGAGAGCCTTGGAGGA AGAGACCACTGGTAGTAGTGTCGTCAAGAGACAGAAAACTGGCTGA
AA sequence Show only first row Show all	>Lus10014958 pacid=23152794 polypeptide=Lus10014958 locus=Lus10014958.g ID=Lus10014958.BGIv1.0 annot-version=v1.0 MDHNGFTDEKAESRVYVGNLDLRITEATLIKMFSPYGTIISEDFLWHTRGPKRGEPRGFAFVQFSSKEQNGLLMPTYKVRMQEARLAKEKMHGRLACGRP LVVRVSTEQNNNDQSSAPQGSSRTARETKKPGGLHLLASSSRTAGQKKTSKSAKIAAMKNKLRALEEETTGSSVVKRQKTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52545			unknown protein		Lus10014958 [exp]	0	1
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	1.0	0.9130
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023484 [exp]	6.6	0.8566
AT5G51960			unknown protein		Lus10036504 [exp]	10.6	0.8420
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031006 [exp]	14.5	0.8724
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	14.7	0.8544
AT4G14420			HR-like lesion-inducing protei...		Lus10041149 [exp]	17.0	0.8544
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	19.9	0.8582
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	22.8	0.8530
AT1G16430			Surfeit locus protein 5 subuni...		Lus10040343 [exp]	26.7	0.8051
AT4G33100			unknown protein		Lus10033863 [exp]	26.7	0.8414

Compare expression of checked genes

Lus10014958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.