Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25680 313 / 7e-109 PPPDE putative thiol peptidase family protein (.1) AT4G25660 309 / 3e-107 PPPDE putative thiol peptidase family protein (.1) AT2G25190 91 / 3e-22 PPPDE putative thiol peptidase family protein (.1) AT1G80690 84 / 1e-19 PPPDE putative thiol peptidase family protein (.1) AT5G25170 84 / 1e-19 PPPDE putative thiol peptidase family protein (.1) AT5G47310 81 / 2e-18 PPPDE putative thiol peptidase family protein (.1) AT4G17486 80 / 5e-18 PPPDE putative thiol peptidase family protein (.1.2) AT1G47740 81 / 6e-18 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 81 / 2e-17 unknown protein AT3G07090 52 / 9e-08 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038841 [exp] 426 / 2e-153 AT4G25680 343 / 2e-120 PPPDE putative thiol peptidase family protein (.1) Lus10027510 [exp] 372 / 2e-131 AT4G25680 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1) Lus10039275 [exp] 367 / 9e-130 AT4G25680 348 / 6e-122 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 95 / 1e-23 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10018326 [exp] 94 / 2e-23 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10007844 [exp] 90 / 1e-21 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 88 / 4e-21 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 85 / 1e-19 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10005341 [exp] 84 / 1e-19 AT5G25170 303 / 9e-106 PPPDE putative thiol peptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143132 [exp] 357 / 9e-126 AT4G25680 331 / 2e-115 PPPDE putative thiol peptidase family protein (.1) Potri.004G079800 [exp] 352 / 7e-124 AT4G25680 339 / 1e-118 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 92 / 1e-22 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 91 / 4e-22 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 88 / 5e-21 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 85 / 5e-20 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 84 / 2e-19 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 83 / 3e-19 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.009G113168 [exp] 77 / 6e-17 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 77 / 6e-17 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10014960 pacid=23152737 polypeptide=Lus10014960 locus=Lus10014960.g ID=Lus10014960.BGIv1.0 annot-version=v1.0 ATGACGGATGTCGTATTGCACATATACGACGTGACGAACAGTGGATCGGAGAAGACGAACAGTACGATCATGCAGATCAACAAGATCTTCAAGGACGGAA TTGGCATCGGCGGCATCTTCCACAGTGCTGTTCAGGTCTATGGAGAAGATGAGTGGTCTTTCGGCTTTTGTGAACGAGGAACTGGAGTGTTCAGTTGCCC TTCTGGGAAGAATCCAATGTATACGTACCGTGAAAGCATCATCCTTGGAAAAACCAGCTTCTCAATCTCTAAAGTGAACCAGATCCTGCGTGAATTCAGT AGGGAATGGCCCGGAAGTGCTTACGATTTGTTAGGCAAGAACTGTAATCACTTCTGTGATGAGTTCTGTGAGAAGTTAGGTGTACCGAAACTTCCAGGTT GGATTAACCGGTTTGCCAATGCTGGCGATGCAGCTGTCGAAATAGCTGGAAACACTGCCGTACGATTCAGGCAAGCGAAAACCGAGATCATAACAGCTAG TAAAGTAGCCTATCGTTTCCTGTTGGGTGTTGGATCCAACAACGGTACTACTGGCAACTCTCCTGGCAACTCCCCTGGGTCTCCAAGGATTCAAGCAACA TGGTTCAAGAACCTCGTCACCAACGGTGCGAAACCATCTACCAGTACAGAAATAGACTCTCCGCAACAGCAGAAGAAGTCTCGACAAGAGGAGTCGGATA GGCTACTACTGTAA
AA sequence Show only first row Show all	>Lus10014960 pacid=23152737 polypeptide=Lus10014960 locus=Lus10014960.g ID=Lus10014960.BGIv1.0 annot-version=v1.0 MTDVVLHIYDVTNSGSEKTNSTIMQINKIFKDGIGIGGIFHSAVQVYGEDEWSFGFCERGTGVFSCPSGKNPMYTYRESIILGKTSFSISKVNQILREFS REWPGSAYDLLGKNCNHFCDEFCEKLGVPKLPGWINRFANAGDAAVEIAGNTAVRFRQAKTEIITASKVAYRFLLGVGSNNGTTGNSPGNSPGSPRIQAT WFKNLVTNGAKPSTSTEIDSPQQQKKSRQEESDRLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	0	1
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	5.6	0.8926
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	9.7	0.8393
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	9.9	0.8554
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	16.8	0.7909
					Lus10014959 [exp]	17.9	0.7599
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10040121 [exp]	17.9	0.7912
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10028280 [exp]	18.9	0.8116
AT4G25680			PPPDE putative thiol peptidase...		Lus10038841 [exp]	19.5	0.8773
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	21.2	0.8014
AT3G43850			unknown protein		Lus10038073 [exp]	25.6	0.8372

Compare expression of checked genes

Lus10014960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.