Plant FIBer expression Database

Lus10014961 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25670 107 / 5e-30 unknown protein
AT4G25690 104 / 1e-28 unknown protein
AT5G52550 83 / 3e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038842
[exp]
197 / 9e-65 AT4G25670 149 / 3e-45 unknown protein
Lus10039276
[exp]
93 / 6e-24 AT4G25670 159 / 2e-49 unknown protein
Lus10027511
[exp]
93 / 8e-24 AT4G25670 153 / 3e-47 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G079900
[exp]
107 / 2e-29 AT4G25670 159 / 2e-49 unknown protein
Potri.017G143215
[exp]
91 / 3e-23 AT4G25670 151 / 4e-46 unknown protein
PFAM info
Representative CDS sequence
>Lus10014961 pacid=23152843 polypeptide=Lus10014961 locus=Lus10014961.g ID=Lus10014961.BGIv1.0 annot-version=v1.0
ATGGATAATAGCATAGCGGGTAATAACATGCAACCGGTTGCAAGAAAAGCGAAGAAGAAGACCGTGAAAGGCGAGATAGACCGCCTCAAACAGGCCGAGA
AGAAGAAGAGACGCCTCGAGAAAGCTCTCGCTACGTCAGCAGCCATTAGGGCTGAGCTGGAGAAGAAGAAGCAGAACAAGAGAGAAGAACAACAGCGGCT
CGATGAAGAGGGTGCCGCGATCGCCGAGGCAGTAGCGCTCCACGTTCTGCTGGGCGACGAAGACTCTGATGATTCTGACTCCGCTCGCAATGTCAACCTC
TTCACTAATGGCTATCGTGCTAGCTACAATCGCAGCTGGTCTTCGTCCTCGTATGGCTTCAACGACGGAGGTTGGGGAACTGCGGAGTTATCTGCTGGGC
TCATTGCTGCTCAGGCTGTCTCGTCTCTCCAGATCGGCGAATATCCCTCCATCTTTGGACGACAGTTCTCGAGTTGCCGTTAA
AA sequence
>Lus10014961 pacid=23152843 polypeptide=Lus10014961 locus=Lus10014961.g ID=Lus10014961.BGIv1.0 annot-version=v1.0
MDNSIAGNNMQPVARKAKKKTVKGEIDRLKQAEKKKRRLEKALATSAAIRAELEKKKQNKREEQQRLDEEGAAIAEAVALHVLLGDEDSDDSDSARNVNL
FTNGYRASYNRSWSSSSYGFNDGGWGTAELSAGLIAAQAVSSLQIGEYPSIFGRQFSSCR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G25670 unknown protein Lus10014961
[exp]
0 1
AT1G56110 NOP56 homolog of nucleolar protein N... Lus10040032
[exp]
2.6 0.9222
AT5G50160 ATFRO8, FRO8 ferric reduction oxidase 8 (.1... Lus10019488
[exp]
4.9 0.9036
AT1G72180 Leucine-rich receptor-like pro... Lus10003503
[exp]
4.9 0.9212
AT2G20780 AtPLT4 Major facilitator superfamily ... Lus10031637
[exp]
5.8 0.9336
AT2G20780 AtPLT4 Major facilitator superfamily ... Lus10033702
[exp]
6.9 0.9182
AT2G21180 unknown protein Lus10007573
[exp]
7.2 0.9165
AT4G14540 CCAAT NF-YB3 "nuclear factor Y, subunit B3"... Lus10016616
[exp]
8.2 0.9096
AT1G25370 Protein of unknown function (D... Lus10035144
[exp]
8.4 0.9189
AT1G18265 Protein of unknown function, D... Lus10007082
[exp]
8.4 0.9347
AT5G60850 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) Lus10034652
[exp]
8.5 0.9195

Lus10014961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.