Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24020 263 / 5e-88 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038843 [exp] 271 / 1e-90 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080100 [exp] 264 / 3e-88 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014962 pacid=23152841 polypeptide=Lus10014962 locus=Lus10014962.g ID=Lus10014962.BGIv1.0 annot-version=v1.0 ATGCTCCTCATCTCTCCACTGGAACCGCAAACCCGAACTCGCCGGCGAAACTCCCCGAGTCGTCGTCATAACCTCCGGAAAAGGCGGAGTCGGGAAAACC ACCACGACGGCCAACATCGGCATCTCCCTAGCCCGCCTGGGCTTCTCCGTCGTGGCAGGGGGCCGCCGCCGCCGGCCCCCGCACTCCCGCCTGACACCTC GGCTCCCGGAAAAAAAAAAAAGACCCGCGTCAACTACACGCTCGTCGAGGTCCTCAACGGCGACTGCCGCCTCGACCAGGCTCTGGTACGTGACAAGCGG TGGTCCAATTTCGAGCTCCTCTGCATCTCCAAGCCGCGATCGAAGCTTCCGCTAGGGTTCGGAGGTAAAGCACTAGTATGGCTTGTGGATTCTTTGAAAG AACGTCCAGAAGGTTCCCCGCAGTTCATCCTAATCGATTGTCCAGCCGGAATCGACGCCGGATTCATCACCGCCATAACTCCGGCGAATCAGGCGGCTGT GGGGACACGCACGGGAGTGGCCAGACCAGGGACAATGCTGGGGGCGATTCCGGAGGACTCTGAGGTGATCAGAAGTACAAACAGAGGGTATCCATTGGTG TTGAATAAGCCGCCGACGTTGGCTGGATTGGCGTTTGAGCAAGCTGCTTGGAGGCTTGTGGAGCAGGATAGTATGCAAGCTGTAATGGTGGAGGAGGAGC CGAAGAAGAAAGGGTTCTTCTCGTTCTTTGGTGGGTGA
AA sequence Show only first row Show all	>Lus10014962 pacid=23152841 polypeptide=Lus10014962 locus=Lus10014962.g ID=Lus10014962.BGIv1.0 annot-version=v1.0 MLLISPLEPQTRTRRRNSPSRRHNLRKRRSRENHHDGQHRHLPSPPGLLRRGRGPPPPAPALPPDTSAPGKKKKTRVNYTLVEVLNGDCRLDQALVRDKR WSNFELLCISKPRSKLPLGFGGKALVWLVDSLKERPEGSPQFILIDCPAGIDAGFITAITPANQAAVGTRTGVARPGTMLGAIPEDSEVIRSTNRGYPLV LNKPPTLAGLAFEQAAWRLVEQDSMQAVMVEEEPKKKGFFSFFGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10014962 [exp]	0	1
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10038843 [exp]	1.0	0.8715
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	2.2	0.8363
AT5G60050			BTB/POZ domain-containing prot...		Lus10038475 [exp]	4.0	0.8004
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10008462 [exp]	4.7	0.8452
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	13.6	0.8228
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	15.1	0.7972
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	15.5	0.8445
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	18.0	0.7782
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	19.1	0.8129
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	22.3	0.8257

Compare expression of checked genes

Lus10014962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.