Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25720 374 / 4e-130 ATQC, QCT GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038844 [exp] 595 / 0 AT4G25720 369 / 3e-128 GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073700 [exp] 413 / 8e-146 AT4G25720 369 / 2e-128 GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3) Potri.017G146200 [exp] 401 / 5e-141 AT4G25720 367 / 6e-128 GLUTAMINYL CYCLOTRANSFERASE, ARABIDOPSIS THALIANA GLUTAMINYL CYCLASE, glutaminyl cyclase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF05096 [flax] [poplar] Glu_cyclase_2 Glutamine cyclotransferase
Representative CDS sequence Show only first row Show all	>Lus10014963 pacid=23152785 polypeptide=Lus10014963 locus=Lus10014963.g ID=Lus10014963.BGIv1.0 annot-version=v1.0 ATGGGTGCCACCAGATCGCTTAAGAAGATCAAGCGATCAACACCACCCACTAAAACCAACAACTCCTCCTCCAATCTTCTTCCCATGCCCACTCCTTCAC AATCTCCATTTCTCAATTGGAGGACCAAATCCCCGCTCTTCGTCTCCTTAGTAATGGCTTCCACCGTCATCCTCCTTCTTGGAATCTCCTCGATCGTCTG GAACAGCTTCTCCCCCGCGGCCGTCGTTGATGCAACGCCCAAAATCTACTCGATCCAGGTGGTCAACGAGTACCCTCACGACCCTGAAGCATTCACCCAG GGTCTGCTTTATGCGGGGAATGATAGCTTTTATGAGTCAACTGGGCTCTATGATAAGTCTACGGTTAGGAGAGTGAGTCTTCAGACTGGGAAGGTTGAGG CTGTCGAGGGCATGGATGGACAGTATTTCGGCGAAGGCTTAACTCTTATCGGCGAAAGGCTGTTTCAAGTAACTTGGTTGACACACACCGGTTTCATGTA TCACCGAAGTAATCTAAGCAAGATTGGGGAATTCAGTCATCCAATGGAGGATGGATGGGGTCTGGCAACCGATGGAAAAGTTCTGTTCGGTAGTGATGGC ACGTCCAATCTGTATCAACTTGACCCCCTAACATTCAAAGTGATCAAAGAACAAACAGTGAAATACAACAACCTTGATGTACGCTACATCAACGAGCTAG AGTATATAAACGGCGAAATCTGGGCTAACGTTTGGCAGACTGATTGTATCGCAAGAATATCACCCCAAGATGGTACTGTTGTCGGATGGATTCTTCTTCC ACAACTGAGTAAGGGACTGAGAGCATCTGGGCACCGGAGCATTGATGTTCTTAACGGAATAGCATGGGATAGCGATAGGAAGCGACTTTTTGTGACTGGA AAGCTGTGGCCAAAGCTCTACGAAATCAAGTTACAGCCAGTAAGGAAACAAATCAAGAACGAAAACATCGAGCAGCTTTGTGTGCCGTGA
AA sequence Show only first row Show all	>Lus10014963 pacid=23152785 polypeptide=Lus10014963 locus=Lus10014963.g ID=Lus10014963.BGIv1.0 annot-version=v1.0 MGATRSLKKIKRSTPPTKTNNSSSNLLPMPTPSQSPFLNWRTKSPLFVSLVMASTVILLLGISSIVWNSFSPAAVVDATPKIYSIQVVNEYPHDPEAFTQ GLLYAGNDSFYESTGLYDKSTVRRVSLQTGKVEAVEGMDGQYFGEGLTLIGERLFQVTWLTHTGFMYHRSNLSKIGEFSHPMEDGWGLATDGKVLFGSDG TSNLYQLDPLTFKVIKEQTVKYNNLDVRYINELEYINGEIWANVWQTDCIARISPQDGTVVGWILLPQLSKGLRASGHRSIDVLNGIAWDSDRKRLFVTG KLWPKLYEIKLQPVRKQIKNENIEQLCVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10014963 [exp]	0	1
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	1.7	0.7839
AT3G53390			Transducin/WD40 repeat-like su...		Lus10000150 [exp]	5.3	0.7288
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10011338 [exp]	6.2	0.7443
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	9.6	0.7434
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Lus10038844 [exp]	13.0	0.6881
AT1G78620			Protein of unknown function DU...		Lus10038149 [exp]	13.6	0.7296
AT1G20225			Thioredoxin superfamily protei...		Lus10005616 [exp]	15.4	0.7464
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	16.7	0.7366
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	22.4	0.6972
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10006328 [exp]	23.1	0.6994

Compare expression of checked genes

Lus10014963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.