Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031018 [exp] 59 / 3e-09 AT3G59250 57 / 1e-08 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014965 pacid=23152732 polypeptide=Lus10014965 locus=Lus10014965.g ID=Lus10014965.BGIv1.0 annot-version=v1.0 ATGGCGCAATGCCAGAACATGATCCACCCATTTCAAGTAACGGGGAGTCCGCTGGGCGAGCACGGTAGATTTCGGGATAATCAGTTACACAAAGTTGGTT ATCTCAAGAAGTTGAGGCTCAGCCTCCCTTGTTCATCAAGGCTGAAGCATCTCGAGCTATGCGATTGTCATTGGTTGGAGGATGTTCAGATCCTTTACAC TCCGTCGCTCGTTTCGTTCGAGTTGAACAACGTTGGTTATCTCGAGAAGTTGAAGCTCAGCCTCCCTGCTTCATCAAGGCTGAAGCATCTCGAGCCATGC GATTCTCATCGGTTGAAGGATGTTCAGATCCTTGACGCTCCGTCGCTCGTTTCGTTCAAGTTGAATCGGGCAGTCGAGCACTGCCTGCTCAGGAAGGTTC CGAAATTGAAAGACCTATCGGTGTCGATAGGTCGCGACACAGGGATATTGGAAGGGTTGAAGCCGTTCGCTAGTTTTTTCGCACAGTTGAAGCGTCTCCA GATAGATGGTAACAAACTCGGGGAGGCAGTTCCCGAGTTAGCAATGCTCGAGGAATTGGATATCACCGTTGGTGAAGTCAAGAGCACGGACCTGCTGCGG TACATTAGCATGACCGAACAAGCGCCTCTCTTGAGGAAACTTGCGATCCGGGTACAACCGAGGAAAATTCTGGTCCGGGTACTTTATCCCCGACCGGAGA GTGATTCAGCTTCAGACACTGTGTTGAAGCGTCTGGAAGATCGTCGTTGCTTCAAGGATCTGAAGGTGTTGGTGTTTTATGGGTACGAAGGTTGTGATGC GGACAATGCATTCATATGGTATTTCGTTGATAATGACGAATCGCTCGATACCGTTGTAATGGATCCTCACTACCAGCCGGCTCTTCGACCACAGATACGT ACCATGACATGGGGCCCTTACAGTTACAGAGGACGACTTGCTGCTGTGGAATTTGGTAAGAGATTAGCTCATCGGGTTAAGCCTAGCAATGCTCGAGGAA TCAGAAATCACCGTTGGCGAACTCGAGAGCACGGACCTGTTGCTGTACATTATCATGGTCGGACAAGCGCCTCGCTTGAGGAAACTTGCTATCCGGGTAC AAGCAAGGAAAGTTCCGGTCCAGGTACTTTATCCTGGACCGGAGAGTGA
AA sequence Show only first row Show all	>Lus10014965 pacid=23152732 polypeptide=Lus10014965 locus=Lus10014965.g ID=Lus10014965.BGIv1.0 annot-version=v1.0 MAQCQNMIHPFQVTGSPLGEHGRFRDNQLHKVGYLKKLRLSLPCSSRLKHLELCDCHWLEDVQILYTPSLVSFELNNVGYLEKLKLSLPASSRLKHLEPC DSHRLKDVQILDAPSLVSFKLNRAVEHCLLRKVPKLKDLSVSIGRDTGILEGLKPFASFFAQLKRLQIDGNKLGEAVPELAMLEELDITVGEVKSTDLLR YISMTEQAPLLRKLAIRVQPRKILVRVLYPRPESDSASDTVLKRLEDRRCFKDLKVLVFYGYEGCDADNAFIWYFVDNDESLDTVVMDPHYQPALRPQIR TMTWGPYSYRGRLAAVEFGKRLAHRVKPSNARGIRNHRWRTREHGPVAVHYHGRTSASLEETCYPGTSKESSGPGTLSWTGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014965 [exp]	0	1
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	6.0	0.7831
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10033886 [exp]	16.1	0.7768
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	21.7	0.7701
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	22.9	0.7752
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026231 [exp]	24.9	0.7651
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	34.4	0.7657
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	38.4	0.7626
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	38.7	0.7322
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	40.2	0.7483
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	42.0	0.7334

Compare expression of checked genes

Lus10014965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.