Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52650 178 / 4e-56 RNA binding Plectin/S10 domain-containing protein (.1) AT4G25740 177 / 7e-56 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G41520 150 / 4e-45 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G52660 109 / 7e-28 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 91 / 3e-21 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT4G01280 89 / 1e-20 MYB Homeodomain-like superfamily protein (.1.2) AT5G02840 88 / 3e-20 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT3G09600 86 / 2e-19 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038846 [exp] 362 / 1e-124 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10039282 [exp] 196 / 3e-63 AT4G25740 236 / 1e-80 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10024669 [exp] 186 / 4e-55 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10032298 [exp] 185 / 6e-55 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10027521 [exp] 141 / 4e-40 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10039284 [exp] 129 / 1e-34 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 104 / 8e-26 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 100 / 2e-24 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10019902 [exp] 83 / 5e-18 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G027900 [exp] 164 / 9e-51 AT5G52650 179 / 8e-58 RNA binding Plectin/S10 domain-containing protein (.1) Potri.004G073500 [exp] 164 / 1e-50 AT4G25740 178 / 6e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.017G146700 [exp] 163 / 3e-50 AT4G25740 180 / 1e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.005G040100 [exp] 162 / 7e-50 AT4G25740 177 / 2e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.004G073300 [exp] 131 / 3e-36 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 122 / 9e-33 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 109 / 1e-27 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 108 / 3e-27 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 94 / 4e-22 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 87 / 1e-19 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03501 [flax] [poplar] S10_plectin Plectin/S10 domain
Representative CDS sequence Show only first row Show all	>Lus10014966 pacid=23152742 polypeptide=Lus10014966 locus=Lus10014966.g ID=Lus10014966.BGIv1.0 annot-version=v1.0 ATGCCGCTGAACCCTGTCACAAGTGCTGCTGTCAGTTTGTCAAATCAAGGAAAAGTTCCATCACTGTCGAATAATTCTTGTAGCAGCACTGAGAGTACTC CCAAAACTAAACAAACTGGTGAAATGGCAGAACAAGGAAATATGTTCAGAGTTCTGCCTGACTTTTCCCGTGTATACACTTTCATAGGCAGTGTATTCGA TCCAGATGCCACTGACCATCTGCCAAAGCTCAAGAAAATGGATCCCATAGATGTCGAAACGGTGCTGTTGTTGATGCGAAACCTCTCCATTAATTTAACC AGTCCCGACTTCGAGGATCATATTGATGAGTTTTATTTCTCCGTGGGAAATACAGAGGGAGTGTGCTACGCGAAGAAGGATTTCAACCTAGCGAAGCATC CAGACATTGATGTCCCGAATCTTCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTCCGCGAGACGTTTGCCTGGATGCACTACTACTG GTATTTGACCAACGAAGGGATCGAGTTCTTGAGGACTTACCTCAACTTGCCGTCTGAGATTGTGCCTGCTACGTTGAAGAAGTCTGCTAAGCCTATGGGA GGTCCACAAGGAGACCGCGCGAGGGGACCTCCTCGTTTCCATGGAGAACGTCCGAGATTTAGTGACCGTGATGGCTACCGTAGCGGACCTCGTGGTGGAG GTGACTTTGGCGGTGAGAAGGGCGGTGCTCCGGCCGAGTTCCAGCCTTCGTTTAGGGTATTTTTTTTGTGTCGAATGGACTTTTCGGTCAACAGATTTCT CCTTCGTGTTTCATGA
AA sequence Show only first row Show all	>Lus10014966 pacid=23152742 polypeptide=Lus10014966 locus=Lus10014966.g ID=Lus10014966.BGIv1.0 annot-version=v1.0 MPLNPVTSAAVSLSNQGKVPSLSNNSCSSTESTPKTKQTGEMAEQGNMFRVLPDFSRVYTFIGSVFDPDATDHLPKLKKMDPIDVETVLLLMRNLSINLT SPDFEDHIDEFYFSVGNTEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRTYLNLPSEIVPATLKKSAKPMG GPQGDRARGPPRFHGERPRFSDRDGYRSGPRGGGDFGGEKGGAPAEFQPSFRVFFLCRMDFSVNRFLLRVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	0	1
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10038846 [exp]	2.0	0.8261
AT5G24510			60S acidic ribosomal protein f...		Lus10002680 [exp]	5.8	0.7771
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	9.9	0.7099
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	10.0	0.6986
AT5G24510			60S acidic ribosomal protein f...		Lus10008944 [exp]	10.6	0.7388
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	10.8	0.6946
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	11.5	0.7408
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	13.0	0.7361
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	14.7	0.7025
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	15.2	0.7073

Compare expression of checked genes

Lus10014966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.