Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 74 / 1e-16 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 45 / 2e-06 Copper transport protein family (.1) AT1G63950 45 / 3e-06 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 44 / 9e-06 Heavy metal transport/detoxification superfamily protein (.1) AT5G52730 43 / 3e-05 Copper transport protein family (.1) AT3G06130 42 / 0.0001 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G26690 40 / 0.0001 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 41 / 0.0002 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 41 / 0.0002 Heavy metal transport/detoxification superfamily protein (.1.2) AT3G05920 39 / 0.0003 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027524 [exp] 102 / 3e-26 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 95 / 1e-23 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 72 / 8e-16 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 71 / 2e-15 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 68 / 7e-15 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 66 / 8e-14 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10017520 [exp] 65 / 1e-13 AT1G01490 52 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039285 [exp] 64 / 4e-13 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 62 / 1e-12 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132200 [exp] 79 / 5e-19 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 76 / 4e-18 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 76 / 9e-18 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 73 / 2e-16 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 71 / 3e-16 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 70 / 1e-15 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 69 / 2e-15 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 70 / 3e-15 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147000 [exp] 61 / 3e-12 AT1G01490 61 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 61 / 3e-12 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10014967 pacid=23152774 polypeptide=Lus10014967 locus=Lus10014967.g ID=Lus10014967.BGIv1.0 annot-version=v1.0 ATGAAGAAATTGGTGTTGAAGCTGGATTTGCACGATGACAAGGATAAGCAAAGAGCTATGAAGATCGTCTCTAGCCTTTCAGGGGTGGACTCGATCTCCA TGGACATGAAAGAAATGAAGCTGACGGTAACAGGGGACGTCGACCCGGTCCACGCCGTCAGCAAGCTGAGGAAATCCTTCCGCCGGGCGGAGATCGTCAC GGTGGGTCCCGCGAAAGAGCCAGAGAAGAAGCCGCCACAGCAAGGTGGCGATCAGCAGAAGAAAGACCCCCAGCAGGGGGCGGCCAATAACAAGCCTGGA GGAGGAGGAGGAGGAGGTGGCGGCGACAACAAGGCTGGTGGCGACGGTGACAAGAAGAACTCGTCGTCCGGCGGTGGCGGAGGAGGAGGTGGGTTTTCCA AGGACGATTATAATAATTCGTACGAGATTGTGAACCACAATGCTTACAGGAGTTATTACCATCAGCCGCCGCCGGCTAGTTATTACTACGTTCCGCCGCG GAGTGCGGAGGAGGATCCCAACTCTTGTGTGATTTGTTAG
AA sequence Show only first row Show all	>Lus10014967 pacid=23152774 polypeptide=Lus10014967 locus=Lus10014967.g ID=Lus10014967.BGIv1.0 annot-version=v1.0 MKKLVLKLDLHDDKDKQRAMKIVSSLSGVDSISMDMKEMKLTVTGDVDPVHAVSKLRKSFRRAEIVTVGPAKEPEKKPPQQGGDQQKKDPQQGAANNKPG GGGGGGGGDNKAGGDGDKKNSSSGGGGGGGGFSKDDYNNSYEIVNHNAYRSYYHQPPPASYYYVPPRSAEEDPNSCVIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10014967 [exp]	0	1
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10018510 [exp]	1.4	0.9233
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Lus10040388 [exp]	2.0	0.9227
AT3G29034			unknown protein		Lus10033010 [exp]	8.9	0.8986
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	13.0	0.8794
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	13.6	0.9048
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	17.3	0.8974
AT5G05340			Peroxidase superfamily protein...		Lus10000625 [exp]	18.8	0.8321
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	20.0	0.8926
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	20.2	0.8936
AT1G52790			2-oxoglutarate (2OG) and Fe(II...		Lus10005773 [exp]	21.2	0.8415

Compare expression of checked genes

Lus10014967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.