Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29260 214 / 3e-69 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 197 / 3e-62 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 190 / 1e-59 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 189 / 3e-59 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 134 / 3e-38 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 132 / 3e-37 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 129 / 6e-36 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 128 / 1e-35 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT1G04040 125 / 3e-34 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G39920 62 / 4e-11 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011140 [exp] 198 / 9e-63 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 196 / 4e-62 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10038847 [exp] 187 / 3e-60 AT5G51260 97 / 2e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 184 / 3e-57 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 182 / 2e-56 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 149 / 1e-43 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 149 / 2e-43 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 123 / 2e-34 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 88 / 1e-21 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152900 [exp] 226 / 9e-74 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 186 / 8e-58 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 185 / 1e-57 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 154 / 9e-46 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 144 / 7e-42 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 140 / 2e-40 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 134 / 4e-38 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 65 / 7e-12 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10014968 pacid=23152722 polypeptide=Lus10014968 locus=Lus10014968.g ID=Lus10014968.BGIv1.0 annot-version=v1.0 ATGGCATCATCAGCCTCTCCACACCTCCTCCCCTTGATTTCCCTGATCTTCATCTTCCTATCCTCCGCCGTCACCGCCGCCGCGGTTTCCCACTCACCAA CCATCCAGCTCCCCTCCGCCTCTGCCGCCGCCGCCGCTGGGGTTTCTAACAACTACGACGACAAGGTGTACTGCGACAGCTGGAAGCTGTCGGTGGAAAC GAACAATGCGGGCGATTTGGCGAGCAACAAGCCCCAGAGGTGCCGCGATTACCTAGTGGAGTACTTGACCGGCGACGGCCACCTGGCGGATGCCGATATG GTGGCGTACGACGCGCTAACTTACGCCAAGACTGTGGAGATTGTGGGGGATGGGAAGGATGGTTGGATATTTGACCTTGATGAAACTCTGCTCACCAATT TGCCTTACTTCCGACACTACGATTTCGGATACATACCGGTGAACTACACGGCGTATTTTGAGTGGGTGGAAATGGCGGCGGCGCCTGCTTTCCCGTCGAG TCTGAAGCTCTACAACGAGCTCAAGAAACTTGGATTTGCAGTGATCATAGTGAGTGGAAGAGGGGAGGCGCAGAGGAACGTCACAGAGTTAAACCTTGCC AGAGTTGGATTCAACGGCTGGGATCGTCTTGTTTTGGGGGAAAGTTCAGACGCAGGGAAAGGAATGAAGGACTTGAAATCAGGGAAGAGGAAGAAGCTGA AGGAAGAAGGGTACAGACTCCATGGCAACTATTCTCACCAGTGGTGTAGCTTGCTTGGAGATGATATGGCTACCAAGTCTTTCAAGTTCCCTAACCCTAT GTATTACATCCCTGATTGGGGTAACTAA
AA sequence Show only first row Show all	>Lus10014968 pacid=23152722 polypeptide=Lus10014968 locus=Lus10014968.g ID=Lus10014968.BGIv1.0 annot-version=v1.0 MASSASPHLLPLISLIFIFLSSAVTAAAVSHSPTIQLPSASAAAAAGVSNNYDDKVYCDSWKLSVETNNAGDLASNKPQRCRDYLVEYLTGDGHLADADM VAYDALTYAKTVEIVGDGKDGWIFDLDETLLTNLPYFRHYDFGYIPVNYTAYFEWVEMAAAPAFPSSLKLYNELKKLGFAVIIVSGRGEAQRNVTELNLA RVGFNGWDRLVLGESSDAGKGMKDLKSGKRKKLKEEGYRLHGNYSHQWCSLLGDDMATKSFKFPNPMYYIPDWGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29260			HAD superfamily, subfamily III...		Lus10014968 [exp]	0	1
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	7.2	0.9062
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10008993 [exp]	15.9	0.8803
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	16.4	0.9022
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	20.3	0.8978
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	21.7	0.8956
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	22.6	0.8927
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	26.4	0.8872
AT1G16790			ribosomal protein-related (.1)		Lus10033346 [exp]	32.0	0.8704
AT2G33180			unknown protein		Lus10023686 [exp]	36.9	0.8867
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	37.0	0.8808

Compare expression of checked genes

Lus10014968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.