Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49080 258 / 1e-81 Ribosomal protein S5 domain 2-like superfamily protein (.1) AT1G74970 44 / 0.0001 TWN3, RPS9 ribosomal protein S9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038852 [exp] 498 / 5e-176 AT3G49080 370 / 9e-126 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10016295 [exp] 44 / 0.0001 AT1G74970 276 / 3e-95 ribosomal protein S9 (.1) Lus10032862 [exp] 43 / 0.0002 AT1G74970 282 / 1e-97 ribosomal protein S9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144700 [exp] 292 / 4e-95 AT3G49080 353 / 5e-119 Ribosomal protein S5 domain 2-like superfamily protein (.1) Potri.002G132200 [exp] 43 / 0.0002 AT1G74970 267 / 1e-91 ribosomal protein S9 (.1) Potri.014G039600 [exp] 43 / 0.0002 AT1G74970 268 / 4e-92 ribosomal protein S9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10014970 pacid=23152819 polypeptide=Lus10014970 locus=Lus10014970.g ID=Lus10014970.BGIv1.0 annot-version=v1.0 ATGATGCTATCTCGTCTTCTCCCCAAACCTTCACAGCTCCGACTACTCTCCCATCTCTCCTCCAAACCGCAACCTTCACCTCTCCCTACTTCCACCTTCC CCTCCATCTTCCGCCCACTCTCCACCGGCGGCAGCAACAACAATGGCAGCGACGGCAGCGGGAAGGTGTCCGAAGAAGTCTGGAAACTTTCTCAGGAAAC CGGCGGATTAGCCGATTCGTTATTCAGCGACGAGGAGAAGGAGGACACCGGCGGATTGCGCGGGATTTCCGAGTCGAAGGAGCCGAAGAAGTGGCTGATT GCAGAGGACGGCGAGAGAGGCGGCGGTGGAGGAGGGGATGCATTTGGAGGAGCTGAGAGCGGGACGGTGAAGACTTTGGCGGATGTGTCGGAAGATTTGT TGAAGCCATGGAGCTTGAATGATGTAGGAGAGGAGAAGAGCGATACGTTGTTTGAAGGGTTAGGCGGCGGCGGCGGCGGCGGCCGTGGAGGTAGGATTGG GGGTAGTTTGAAGGAGGAGATTGAGAAGAGGGAGGAGGAGATGAAGAAGCTTGCGATTGAGGAGGAGAAGCTTACTACCATTGTCAAAGGTCCGGATCGA GCATTCGGAGATCTGATTGCTGAATCCGGGATCACAGATGAAATGCTGGACAGCTTGATTGCCCTCAAGGACTTTGAAGGGATCCCAGGGTTGCCATCGT TGGGGGAGATAGAGGACATAAGATATGAAAAGAGTACAAGGAGATCGGCAAGAGCTGAGATGGAAAAGCAGAAGCAGGAGGAGATTGCCAAAGCAAGGGT AAGGCAAGTGGATGACAAAGGAAGATCTTACGGAACTGGGAGAAGGAAATGCAGCATTGCCCGCGTGTGGATTCAACCAGGGGAAGGGAAATTCACGGTG AACGAGAAACAATTCGATGTGTATTTCCCCATGATCGACCATCGCGCTGCTCTTCTGAGACCGTTCTCGGAGACTAAGACCTTGGGGCTCTGGGATATCG ACTGTACTGTTAAAGGAGGCGGTGTTTCGGCTCAGTTCATGATCGGTCTCGAAATGTGCAAACAGGTCAAGTCGGAGCGATTCAGTTGGGCATCAGCCGA GCCTTACAAAGCTGGGAACCAGACTTGCGGCCACCACTCAGAGACGGTATATGCCTTTTGCTTTAATGCTGCACGTAACGTAATATTCGTTCGTGTCTTG ATCTTTCTTGTTTCTCTCGACAGCTGGTTTCTTGACGAGGGATTCGCGAGTGGTCGAGAGGAAGAAGCCGGGCAAAGCCAAAGCCAGGAAGAGCTTCCAA TGGGTCAAGCGTTGATGGCGGATTCCTAG
AA sequence Show only first row Show all	>Lus10014970 pacid=23152819 polypeptide=Lus10014970 locus=Lus10014970.g ID=Lus10014970.BGIv1.0 annot-version=v1.0 MMLSRLLPKPSQLRLLSHLSSKPQPSPLPTSTFPSIFRPLSTGGSNNNGSDGSGKVSEEVWKLSQETGGLADSLFSDEEKEDTGGLRGISESKEPKKWLI AEDGERGGGGGGDAFGGAESGTVKTLADVSEDLLKPWSLNDVGEEKSDTLFEGLGGGGGGGRGGRIGGSLKEEIEKREEEMKKLAIEEEKLTTIVKGPDR AFGDLIAESGITDEMLDSLIALKDFEGIPGLPSLGEIEDIRYEKSTRRSARAEMEKQKQEEIAKARVRQVDDKGRSYGTGRRKCSIARVWIQPGEGKFTV NEKQFDVYFPMIDHRAALLRPFSETKTLGLWDIDCTVKGGGVSAQFMIGLEMCKQVKSERFSWASAEPYKAGNQTCGHHSETVYAFCFNAARNVIFVRVL IFLVSLDSWFLDEGFASGREEEAGQSQSQEELPMGQALMADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10014970 [exp]	0	1
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	5.3	0.9043
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	7.3	0.9037
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	8.3	0.8985
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10031620 [exp]	10.8	0.8322
AT4G20020			unknown protein		Lus10036589 [exp]	11.2	0.8798
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	11.4	0.8872
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	11.7	0.8617
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	11.8	0.8733
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	14.6	0.8901
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	14.8	0.8251

Compare expression of checked genes

Lus10014970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.