Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09980 827 / 0 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT4G10760 129 / 2e-30 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038853 [exp] 1683 / 0 AT4G09980 929 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10010408 [exp] 134 / 1e-34 AT4G10760 447 / 2e-154 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10010405 [exp] 135 / 3e-32 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10012141 [exp] 134 / 9e-32 AT4G10760 807 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144400 [exp] 1126 / 0 AT4G09980 874 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.015G147200 [exp] 1120 / 0 AT4G09980 899 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.001G085200 [exp] 136 / 1e-32 AT4G10760 627 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05063 [flax] [poplar] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Lus10014971 pacid=23152759 polypeptide=Lus10014971 locus=Lus10014971.g ID=Lus10014971.BGIv1.0 annot-version=v1.0 ATGGTTTCACCTGAACGTGGCCGGAGCTATTCGAAACGAGAAGTGGATGATAGTTCGGATGTGAAGGGAGAAAAGGCAGGAGATGATGAAGACTGGGAGG GGAGTGACAAAAGGAAGCATAGATCGAGCAAGTCGAGAAAGTTGAGCAATGATGAAGGTGATGGATTAGATGTTGGTGGTAGAAGAAGGAGTTCGGGTGG AGAAAGGAGTGAGAGCCGTAAGAGGTCAGGAGGAGGTGGTGGCAGCTCTAGCAGAGTTGGGAGTGACGAAGATGATTATGAGGCTCGGAAGGATTCAAGG TCGAAGAAGAAACAAGAAGAGAGTAGCTTGGAGAAGTTGAGTAATTGGTACCAAGAAAGTTCGAAGGGGGGAAGTAAAAGCAAAGAAGAGAGGTCTGTTG ATGGAGAACAAGAGAAGGCACTGGATAAAGAGGATAAGTATTCCGATAGGAGAGAAAGCAGTCGAGAGAAAGGCCATGAAGGGAGGAACTCGAGGAGAAG ATGGGATGAATCAGATGCTGACAAAAGGGGTGAAGAAATTGAGAAGAATGAGACGAGAGGGGGGAAGTCTTCTGATTGTAAGCATGAGAGCTCCAAAGAG AGAACTCCTTCTTTTTCTAAACTTGAACAAGGTGAAACGAAGGGCAAAAATGTGGAAGTGATCAGTGAGAAGAGTATGAAAAGTGATAGACGAGATGATG GGGAAAGAAGTAAGAACAAGCATAGGTCAGAAGCTGTTGAGGAAGACAATAAGGATGACTGGTCAGCTCGGGAGAAAAGTGAGAAGCACAGACAACAGAG GTCTTCTTCTGGTAGGGATGTTACTGAGAGCCGTGAAAAATCCTCCCATTTCGATGAAGATGGAACGAGAGAGAAGGGTTTGAGAGACGTAGCACGTTCT AACAGGTCTAGGACCCCCGAGAGGAATTCTGATTCTAGGAGAAGGGACAATGAGAAAGATAGTCACAAGGACGATAAAGCAAAAGGCCGAGATGACAACT GGAGTGATCGGACTAGGGACCGTGAAACATCCAAAGACAACTGGAAGAGAAGGCAACCGGAGAGAGAGTTGAAAGATGGAGATGTTATGTATGATCGTGG GAGAGACTGGGAGCCGAGACATGGTCGAGAAAGGATTGATAACGAAAGGCCTCACGGTCGAAGCAGAGGTGAAGCTGTGAAAACCTCGTCAAATTTTGGG ATTTCGAATGAGAATTATGATGTCATAGAAATCCAAACCAAGCCTCTCAATTACGGACGGGCAGAGTCTGCTTCCAACTTCCCTAGGAAAGTCGAGACGA ATAATGACATGAAGTCAGCCACAGCTGTTGAAGAGGGGAAAAGGAATGATTTATTTGGACCTGGATCTTCGGCTGAGGATTCTAGGGAAAAATATGGGGA TGATTCTACATCAATGCAGGATGCTGGTTCATGGAGAGACGAAAATGACACACAGGGAGGGAAAGGAAGAGGCCAGAAGAGCACTTCGTCTGGTCGTGGC GGTGGTTCAAGTTCTTCCGGAGGTTACGGAAAACAGGATCCTGGCTCCTTTGGTAGATCTCTTCCACAGGGTGTGAAAGGAAATAGGATGGGGAGAGGAG GAGGAAGAGGGAGACCTTCTGGGAGAGACAATCAACAGGTTGGACTTCCATTGCCCATGATGGGATCTCCCTTTGGACCACTTGGGATTCCTCCTGGATC ATTGCAACCCCTTGGCCCCGGTATGCCACAAGCACCGGGTCCTCCGATCCCTGCTGGTGTCTTCATTCCACAGTTTCCGCCTGTTGTTTGGCCTGGTTCT CGTGGCGTCGACATGAATTTGCTCGGTGTTCCACCTTCTTTATCTCCTATTCCGCCTGGTCCTTCAGGCCCCAGATTTCCACCAAATTTAGCGACTCCAT CAAACTCGGCTATGTTCTTCAATCAGGCAGGAGCTGGAAGGGGAACACCTGGTAATATGTGCTCCCCTGGTTTTAATCCTTCAGGACCAGCTGGACGGGG GACTCTTCCACTGGAGAAAACCCCTGGCGGCTGGACACCCTCTAGACCTCCTGGCAAAGCTCCTTCCAGGGGTGAACAAAATGATTACTCCCAGAATTTT GTTGATACCGGTATGCGTCCTCAGAATTTCATTCGGGAGCTTGAGCTGACTAATGTGGTGGAGGATTATCCCAAACTTAGAGAGCTTATCCAGAAGAAGG ACGAGATTGTGGCTAATTCAGCATCTGCTCCCATGTATTTACAACGTGACCTCCGTGAGTTTGACCTCTCCCCCGAGTTCTTTGGCACCAAGTTTGACGT TATCTTGGTTGACCCGCCGTGGGAAGAGTATGTTCATCGCGCTCCTGGGGTTGCTGATCATATGGAGTATTGGACATTTGAAGAAATCTTAAATCTTAAG ATTGAGGCAATTGCAGATACCCCGTCTTTCCTCTTCCTTTGGGTCGGTGATGGCGTGGGACTCGAACAAGGTCGTCAATGCTTGAAAAAGTGGGGGTTCC GTAGATGCGAGGATATTTGTTGGGTAAAAACCAATAAAAGCAATGCAACTCCAGGATTACGACATGATTCCCATACTCTATTCCAGCACTCAAAGGAACA TTGCTTGATGGGGATTAAAGGAACAGTTCGACGAAGCACAGATGGCCATATTATACACGCCAACATCGACACCGATGTGATTATTGCTGAGGAGCCTCCT TACGGTTCGACTCAGAAGCCTGAAGACATGTATCGAATCATCGAGCATTTCTCCCTTGGTCGAAGGAGGCTCGAACTCTTTGGCGAGGATCATAACATCA GAGCTGGCTGGTTGACAGTTGGTAAAGAACTATCATCGTCAAATTTCAGCACTGAGGCATATATCAAGAACTTCGCCGACAAGGACGGGAAAGTGTGGCA AGGAGGCGGCGGCCGGAACCCACCACCGGAGGCACCCCATCTGGTCATAACCACACCGGACATCGAATCACTTCGGCCGAAATCGCCAATGAAGAACCAA AACCAGCAGCAGCAAACAGCGTCCATATCTCTCACTGCTGCCAGTTCCTCAATCAGAAGGCCTACTACTACTACAACCGTGAACTCTCCGCAAAACCCTA ACCCATTCGTGGTCAGCCAAGACCCTGCTTCGTCCTCCTCGACTCAAGCTCCTCCTCCTCCGTGGGCCGCCGTGGCGCCAACTCAGCCACCGTTGAATAA CAGTATGGCGGCGCCGCCAGATGACAAGGCTTTTGAAATGTACGGATACAACAACAATGTTGCTACTGTTACTCCTCTTCCTAGTAATGGAGGAGATCAG TACCATGATTTCGATCCACATAGACCGATGAATTTGTTGTAG
AA sequence Show only first row Show all	>Lus10014971 pacid=23152759 polypeptide=Lus10014971 locus=Lus10014971.g ID=Lus10014971.BGIv1.0 annot-version=v1.0 MVSPERGRSYSKREVDDSSDVKGEKAGDDEDWEGSDKRKHRSSKSRKLSNDEGDGLDVGGRRRSSGGERSESRKRSGGGGGSSSRVGSDEDDYEARKDSR SKKKQEESSLEKLSNWYQESSKGGSKSKEERSVDGEQEKALDKEDKYSDRRESSREKGHEGRNSRRRWDESDADKRGEEIEKNETRGGKSSDCKHESSKE RTPSFSKLEQGETKGKNVEVISEKSMKSDRRDDGERSKNKHRSEAVEEDNKDDWSAREKSEKHRQQRSSSGRDVTESREKSSHFDEDGTREKGLRDVARS NRSRTPERNSDSRRRDNEKDSHKDDKAKGRDDNWSDRTRDRETSKDNWKRRQPERELKDGDVMYDRGRDWEPRHGRERIDNERPHGRSRGEAVKTSSNFG ISNENYDVIEIQTKPLNYGRAESASNFPRKVETNNDMKSATAVEEGKRNDLFGPGSSAEDSREKYGDDSTSMQDAGSWRDENDTQGGKGRGQKSTSSGRG GGSSSSGGYGKQDPGSFGRSLPQGVKGNRMGRGGGRGRPSGRDNQQVGLPLPMMGSPFGPLGIPPGSLQPLGPGMPQAPGPPIPAGVFIPQFPPVVWPGS RGVDMNLLGVPPSLSPIPPGPSGPRFPPNLATPSNSAMFFNQAGAGRGTPGNMCSPGFNPSGPAGRGTLPLEKTPGGWTPSRPPGKAPSRGEQNDYSQNF VDTGMRPQNFIRELELTNVVEDYPKLRELIQKKDEIVANSASAPMYLQRDLREFDLSPEFFGTKFDVILVDPPWEEYVHRAPGVADHMEYWTFEEILNLK IEAIADTPSFLFLWVGDGVGLEQGRQCLKKWGFRRCEDICWVKTNKSNATPGLRHDSHTLFQHSKEHCLMGIKGTVRRSTDGHIIHANIDTDVIIAEEPP YGSTQKPEDMYRIIEHFSLGRRRLELFGEDHNIRAGWLTVGKELSSSNFSTEAYIKNFADKDGKVWQGGGGRNPPPEAPHLVITTPDIESLRPKSPMKNQ NQQQQTASISLTAASSSIRRPTTTTTVNSPQNPNPFVVSQDPASSSSTQAPPPPWAAVAPTQPPLNNSMAAPPDDKAFEMYGYNNNVATVTPLPSNGGDQ YHDFDPHRPMNLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	0	1
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10038853 [exp]	1.0	0.9563
AT1G12050			fumarylacetoacetase, putative ...		Lus10010485 [exp]	2.4	0.9390
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10018659 [exp]	4.5	0.9144
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	4.5	0.9234
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	5.3	0.9207
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	5.3	0.9391
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	6.0	0.9146
AT2G16485			nucleic acid binding;zinc ion ...		Lus10018078 [exp]	6.6	0.8919
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	6.9	0.9156
AT2G16485			nucleic acid binding;zinc ion ...		Lus10042072 [exp]	8.1	0.9117

Compare expression of checked genes

Lus10014971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.