Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23890 613 / 0 unknown protein AT5G52410 523 / 5e-177 unknown protein AT3G25680 179 / 1e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038854 [exp] 1372 / 0 AT5G52410 709 / 0.0 unknown protein Lus10035054 [exp] 182 / 1e-48 AT3G25680 472 / 2e-161 unknown protein Lus10021714 [exp] 184 / 2e-48 AT3G25680 456 / 1e-153 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145700 [exp] 775 / 0 AT5G23890 709 / 0.0 unknown protein Potri.012G142500 [exp] 730 / 0 AT5G23890 650 / 0.0 unknown protein Potri.010G131000 [exp] 183 / 5e-49 AT3G25680 502 / 2e-173 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014972 pacid=23152829 polypeptide=Lus10014972 locus=Lus10014972.g ID=Lus10014972.BGIv1.0 annot-version=v1.0 ATGGCTTCATCAGCCTGCTCCCCGAGCTGTCCTCAGCTCCGATTGGCATTCAACTCCCGAGGATCGCTTCTGGTAAGGACGAAGCTCATCGATTGCAAGA ATCTTCGCCTGCTCTGCTCGGCTCAGTACGGAAGGCTATGGTCTGGTGATCGTAGGCGTAGCTCTGTTGTCTCCGCCTCCACCAAGGATAGCAGTTTCGC CGGATGGTCCGATTCCGCTACTATGGAGGAGAAGGAGGGTGAATCGAAGTCTTCCGAGGAGAAGAATTGGTTCAGAGGGAATGCGGCGGCCGGAGCTGCT GGGCTAGTGTTGGTCGCTGGTATTGCGTTGGCCGGTTTGGCGGTCTCTAACCGGAGCAGTTCAAGACGAGAACAGCAGATGGAGCCATTAACGCCACAGC AGGAATTGATTCTGTCATCTGAACAAGAGGAGGAGAAAATGGAAGAGGAAAACCATGGGAAGATTGCTGAAAGTGAGTTGGATGATACTAAGGAGGATAT AGCTCAGTCTAATGAACTTGACGAAGATATGCTTGTTAATGGCGATCAACTTCCTCCAGCTGACATTGGTAATGTTGGTGCCGCTGCAGCAATAGTTCAT GCTTCTGTTGATAATGATGAGGTGACTGTTGGTGAAGAATCAGTTGCTCCTGAAATGAATGCAAGCTCAAGTGCCATGCAATCACTTTCGGAGGCTGTGG ATAATTTGTCTGTGGCAGTTGACAAGCTTGACACGGAATCTGATTCGTTGAACAGTAAGGTTGATGAACTTGTGGATTTGTCTGCCGCCTTACAGTTTGA AGAAAATTCCATTTCTTTGGATTCCTCTAGTCTTGTGGTCGATGAATCCAGCGAGCCTAAAGGTGGAAGTGTTTCTGAAACTCCATTGGTGGATACGACT CTGGAGGATGTTGCACCAAAGGAGAACCTTGAACAGAGCGAAGTTTTAGAGGTGAAGAGAGAGGAAGTTACTTTATCCTTAGAGGTAGATTACTTGCAAG AAAATTTGTCTGCTGAAGCATCTTTGCCACCACCATTACCTTCCATGAACGAACAAGAGACCACTGTAAATGAGATGGATGAAAGCAGTTCGTCGATGGA GTCGACTCCCTTCCTCCCTGTTGGGATACCGGCTCCATCCACTGTTTTCGAGTCTCTTCGGGTGCCACCTGAAAAGGTTCTGGTTCCTGCTGTTGTTGAT CAGGGTCAGGGTCAGGCACTTGCAGCCTTGCAGGTCTTGAAGGTCATTGAGGCTGAAGCTCAACCTGGCGATTTATGCTCACGTCGTGAATATGCTCGTT GGTTGGTTTCTGCAAGTGGGGCTCTTTCAAGGAACTCTGTGTCAAAAGTGTATCCTGCCATGTACATAGAGAATGTTAGTGAACTTGCATTTGACGATAT CACACCTGATGATCCCGACTTCTCATCCATTCAAGGCTTGGCTGAATCAGGACTCATTTCAAGCAAGCTTTCGAGTCACGATTTGCAATCTGTCTCAGAA GATGAGCAAGGTCCATTTTACTTCTCTCCAGAAAGCCCTTTATCGCGTCAGGATCTTGTTAGTTGGAAGATGGCCCTAGAGAAAAGGCAACTTCCAGAAG CTGATAAAAAGACCCTTTATCAGGTCTCTGGTTTTAGAGATATCGATAGAATCCACCCAGATGCATGGCCTTCACTAGTAGCTGATTTATCTGAAGGAGA CCAAGGAATTATATCTCTTGCTTTCGGTTGCACACGACTCTTCCAACCTGACAAACCTGTCACTAAGGCCCAAGCCGCCATTGCTCTTGCACTCGGTGAA GCATCCGACGTGGTCAGCGAGGAGCTTGCCCGAATCGAGGCAGAATCCATGGCGGAAAACGCTGTGTCTGCCCACAATGCTTTAGTGGCTGAAGTAGAAC AGGATATCAATGCCGGATTTGAGAAAGAGCTCTCCATAGAGAGAGGGAAGATCAATGCTGTACAGAAAATGGCTGAAGAGGCTAGCAGTGAATTGGCATT GTTGAAAGCTCAGAGGGAGGAAGATAATATTGCACTGATGAAGGAACGCGCTACCATTGAAGTGGAAATGGAAATTCTCTCGAGGATTCGGCATGAGATG GAGGAGCAACTGCAGAACCTCTTGACGGACAAGGTTGAGATATCGTACGAAAAGGAAAGGATTAGCAAACTGCAGAAACAGGCAGAGGAAGAAAAGGAGG AGGTTTCCCGTCTGCAATACGAACTCGAGGTCGAGAGACGCTCCTTGTCCATGGCCAGGGCATGGGCAGAAGACGAGGCGAAACGAGCCAGAGAACAAGC GAAAGCACTCGAAGAGGCTCGAGACAAGTGGGAGAAACAAGGCATCAAAGTAGTGGTAGACAGCGACCTCCAGCAAGAACAAAGCTCCGCCGAAGCAACA TGGGCAGCCGCTGCTGCCTCAGAAGAAAACCAGTTCTCGGTCGAAGCAGCAGTCAACAGGGCGGAAACACTGAAAGACAAGCTCAAGCTCTTTTCGGAAC AAGTGTCCGGAAAATCAAAAGAAATCATTAACACCGTCGTCCAGAAGATCCTTGCTTTCATCTCAGCTCTGAAAGTGTGGGCTTCAGAGACCAGCTCACA AGCCGAACAAGTAAAGGACGCTACTCTCGCGAAGGCACGTGAATCTATACAAGGGTTTCAGAAGAACACTGCAGAGTTGAGCAATGCCGTGAAGGACAAG GCAAGCGTACCAATCCAAGAGATGCAGCAGACAACTGCAGGGGTCGGATCGGCTGTAAAGGAAGGTGTGAAACGTGTAGTGGGAGACTGCAGGGACGGTG TAGAGAAGCTTACGCAAAGATTCAAGTCGTGA
AA sequence Show only first row Show all	>Lus10014972 pacid=23152829 polypeptide=Lus10014972 locus=Lus10014972.g ID=Lus10014972.BGIv1.0 annot-version=v1.0 MASSACSPSCPQLRLAFNSRGSLLVRTKLIDCKNLRLLCSAQYGRLWSGDRRRSSVVSASTKDSSFAGWSDSATMEEKEGESKSSEEKNWFRGNAAAGAA GLVLVAGIALAGLAVSNRSSSRREQQMEPLTPQQELILSSEQEEEKMEEENHGKIAESELDDTKEDIAQSNELDEDMLVNGDQLPPADIGNVGAAAAIVH ASVDNDEVTVGEESVAPEMNASSSAMQSLSEAVDNLSVAVDKLDTESDSLNSKVDELVDLSAALQFEENSISLDSSSLVVDESSEPKGGSVSETPLVDTT LEDVAPKENLEQSEVLEVKREEVTLSLEVDYLQENLSAEASLPPPLPSMNEQETTVNEMDESSSSMESTPFLPVGIPAPSTVFESLRVPPEKVLVPAVVD QGQGQALAALQVLKVIEAEAQPGDLCSRREYARWLVSASGALSRNSVSKVYPAMYIENVSELAFDDITPDDPDFSSIQGLAESGLISSKLSSHDLQSVSE DEQGPFYFSPESPLSRQDLVSWKMALEKRQLPEADKKTLYQVSGFRDIDRIHPDAWPSLVADLSEGDQGIISLAFGCTRLFQPDKPVTKAQAAIALALGE ASDVVSEELARIEAESMAENAVSAHNALVAEVEQDINAGFEKELSIERGKINAVQKMAEEASSELALLKAQREEDNIALMKERATIEVEMEILSRIRHEM EEQLQNLLTDKVEISYEKERISKLQKQAEEEKEEVSRLQYELEVERRSLSMARAWAEDEAKRAREQAKALEEARDKWEKQGIKVVVDSDLQQEQSSAEAT WAAAAASEENQFSVEAAVNRAETLKDKLKLFSEQVSGKSKEIINTVVQKILAFISALKVWASETSSQAEQVKDATLAKARESIQGFQKNTAELSNAVKDK ASVPIQEMQQTTAGVGSAVKEGVKRVVGDCRDGVEKLTQRFKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23890			unknown protein		Lus10014972 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	1.0	0.9289
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	1.4	0.9086
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	13.2	0.8645
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	20.5	0.8609
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	20.6	0.8746
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10001014 [exp]	22.8	0.8124
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	23.3	0.8742
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	24.0	0.8239
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10041523 [exp]	25.4	0.8025
AT5G52410			unknown protein		Lus10038854 [exp]	35.1	0.7871

Compare expression of checked genes

Lus10014972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.