Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25600 187 / 2e-57 Oxoglutarate/iron-dependent oxygenase (.1) AT3G28490 184 / 1e-56 Oxoglutarate/iron-dependent oxygenase (.1) AT3G28480 178 / 6e-54 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G06300 171 / 4e-51 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT5G18900 164 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17720 109 / 7e-28 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 104 / 6e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G20270 99 / 4e-24 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 92 / 2e-21 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G35820 87 / 7e-20 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038855 [exp] 503 / 0 AT4G25600 250 / 2e-81 Oxoglutarate/iron-dependent oxygenase (.1) Lus10032183 [exp] 172 / 2e-51 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10014502 [exp] 166 / 4e-49 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10012014 [exp] 156 / 1e-45 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 155 / 3e-45 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032184 [exp] 109 / 2e-29 AT3G28480 206 / 2e-67 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10028404 [exp] 99 / 1e-23 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 99 / 1e-23 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 85 / 2e-18 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142800 [exp] 273 / 6e-91 AT4G25600 278 / 4e-93 Oxoglutarate/iron-dependent oxygenase (.1) Potri.017G075100 [exp] 174 / 2e-52 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.008G197700 [exp] 150 / 2e-43 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075300 [exp] 147 / 2e-42 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.005G108000 [exp] 105 / 4e-26 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 98 / 1e-23 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G060800 [exp] 97 / 5e-23 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.002G232100 [exp] 91 / 5e-21 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.007G052600 [exp] 89 / 3e-20 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G091000 [exp] 71 / 5e-14 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0213 [flax] [poplar] ShK-like PF01549 [flax] [poplar] ShK ShK domain-like
Representative CDS sequence Show only first row Show all	>Lus10014973 pacid=23152763 polypeptide=Lus10014973 locus=Lus10014973.g ID=Lus10014973.BGIv1.0 annot-version=v1.0 ATGGCGAAATCGTCGGCATTCAGTTCTTCACTAGTTGTTAATCGTTCCATTTCGCTTCTTCCTGAGCAGCTGCGGGATTCATCAATGGCGGACATCGTAT ACTTCCTCATTCTCATCGCTCTCCTAAATCCGCAGTCCAACTCTTTCGCCGAGAGGGTGTTCTTACATGAAGGCTTTCTGACAGATGAGGAATGTGATCA TCTTGTTTCTATGGCACAAGCTCCGAAGGAGGAAATTGCTGGAAATGGTGATAATTCTATCCAGACGGCAAAGAAGAGGATGCTTGCTGGTAAAAAGCTT CTTTCAGATGTGGATGATAGTATAATTGCAAGGATTGAGGAACGAATTTCTGCCTGGACTTTGCTTCCCCTTGTCAACAGCCAGCCATTACAGGTCACGC ATTACAAAGTAGAAGATCCCGCCACCACGCAGAAGAACATCACTTACTTCAGCAACCACTCTTTATCATCAACCTTCAAACACCCTCTCGTCGCTACTCT AGTGCTATACCTCTCGAACGTGACCCGAGGCGGACAAATTCTCCTCACTCATTCACAGGAGAAGAGCAAGATATGGTCCGATTGCGGAAAGAGCAGCGAC ATTCTAAGGCCGGCAAAAGGGAAAGCGATCCTTCTCTTCAACCTTCGCCTTGACGGTTCCCCTGACCCGAGCAGCTCCCACTCTAGGTGTCCTGTTCAGG AAGGGGAAATGTGGGTTGCTACCAAACTATTCTTTGTAAAACCTGTCACTGCTGGAAAGCTTCCCATTCGCCGATCATCGGATAGGAGCAGCAGCAGCAA CAACGATGAATGCACCGATGAGGACGATAACTGCCAGTCGTGGGCTGCTAATGGTGAATGCCAGAGGAATCCTGTCTATATGATTGGTTCTGATGACTAC TTTGGTACTTGTCGGAAGAGTTGTAAAGCTTGCTGA
AA sequence Show only first row Show all	>Lus10014973 pacid=23152763 polypeptide=Lus10014973 locus=Lus10014973.g ID=Lus10014973.BGIv1.0 annot-version=v1.0 MAKSSAFSSSLVVNRSISLLPEQLRDSSMADIVYFLILIALLNPQSNSFAERVFLHEGFLTDEECDHLVSMAQAPKEEIAGNGDNSIQTAKKRMLAGKKL LSDVDDSIIARIEERISAWTLLPLVNSQPLQVTHYKVEDPATTQKNITYFSNHSLSSTFKHPLVATLVLYLSNVTRGGQILLTHSQEKSKIWSDCGKSSD ILRPAKGKAILLFNLRLDGSPDPSSSHSRCPVQEGEMWVATKLFFVKPVTAGKLPIRRSSDRSSSSNNDECTDEDDNCQSWAANGECQRNPVYMIGSDDY FGTCRKSCKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026736 [exp]	1.7	0.9200
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	2.8	0.9150
AT5G50090			unknown protein		Lus10004229 [exp]	2.8	0.9017
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	3.9	0.8792
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	4.9	0.8704
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	7.7	0.9056
AT2G02410			unknown protein		Lus10042400 [exp]	8.5	0.8661
AT5G23535			KOW domain-containing protein ...		Lus10042614 [exp]	8.7	0.9091
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	12.9	0.8318
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	21.1	0.9099

Compare expression of checked genes

Lus10014973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.