Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25610 375 / 3e-123 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038856 [exp] 939 / 0 AT4G25610 392 / 4e-130 C2H2-like zinc finger protein (.1.2) Lus10027491 [exp] 632 / 0 AT4G25610 446 / 2e-149 C2H2-like zinc finger protein (.1.2) Lus10039246 [exp] 613 / 0 AT4G25610 425 / 4e-141 C2H2-like zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G143200 [exp] 468 / 3e-158 AT4G25610 400 / 2e-131 C2H2-like zinc finger protein (.1.2) Potri.015G146300 [exp] 467 / 1e-157 AT4G25610 386 / 6e-126 C2H2-like zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014974 pacid=23152825 polypeptide=Lus10014974 locus=Lus10014974.g ID=Lus10014974.BGIv1.0 annot-version=v1.0 ATGCCAGTTGTGAAACAGAAAGCGGGCAACACTACTGATGTAATGAAATCAGAAGAAGGCAATGATTCCTTAGACACGTTTATTAGGCAAGCAATGGGGA AGGAGCCTTTGCTTTCCTTCCCGAGGACTAATGATAACCCAGTACAGTGGATCCAACTTCTTCAAGCTCTTGACCAGCAAGATGGACCAGGTTGGCCTTT ACTCACTCCTTTGAAGGTTCAAATGCAGAAATGCGACAAATGTTCACGAGAGTTTTGCTCCTCTATAAACTATAGAAGGCACGTACGAGTTCACCATCGG CTGAAAAAGCTTGATAAGGACACCACGAAAATCAGGAATTTATTAGACGCCTTCTGGGAAAAGCTTTCTGAGGATGAGGCAAAGGAGATTTTGTCATTCA AGGATGTGGCACTGGAGGAAGTGTCTGGATCTTCAATCATTAAGTCGCTGATGGCTCTTAACCGAAAACAAGGGTTATGTCCTCTTCCACAGTACTGTTT GCGAGCCGGTACTGCTCTTCTGGATTTAATCCAAGGGAGATTTCTGTATCCGTTATCCTCAGAGGAATTGTTCAGCATCCTTGATGATGCCAGCGAAAAA ATGTTCCTGTGCGGAGCAGCAATCTCCATGGAGAAGTATATTTTCGAAGGAGAAGCTGCTAAAAACGGTCTTGAAACAAAGAACATAGTTGCATGTACCA GCTTTTTGGTGGAACAGAAGTTGGTTAAGGCATGGCTTGCAGACAAAGATGCTGAAGCCCTGAGGTGCCAGAAATTGCTTGTTGAGGAGGAAGAAGCTGC CCAAAGAAGGCAAGCTGAACTTCTAGAGCGGAAAAGGCTAAAGAAACTCAGGCAGAAAGAGCAGAGAGCCAAGGAGCATCAACAAGAGGCGAAACCCGAT ACCTTGGAGGAGCCAGCTGAACTACCTTGCTCAACTGCATGTAGTTCCAATTCTCACGACATGGAGATTCCTGCAGATCCCTTTTCGTCGTCTTCTGAAC CTATACAACTTGCAGATATAGAAGATGGAGATTTCGATTTGGAGGGTCAGATTGGGTATAGTAATGGTGGAGGAGCTGGCAGAATTTACTATCCAGCAAT GGGAAATTACCGCGGAGGCCGGTGGCCTCAGAAATTGCAATGGAATAGCCACACTCCTAATGGATTCCTCAGGAAGTGGAGTAGAAAGAATAGAGTAGTA GAGTATGGTTGGGAGACGTCAATACCCAGAACAGAGAAATTAGTGATAAACCAACAACAGCCAGAAGATGATCATGCCAAGAAACGTGAAGTTCTGATCG GTTCGATCTCAGTTGCACTTTGTTCGGAGGACAGTAACGACCGGGAAGTTGAGAGGAAGAACTCGCGGGGTACAGTGAAGCAATGGAGGCCTGTGAGCCG AAAAGGTACCAAAGGCCAAGCTCAAGAAGACGAATTCGCCCCTAGAGAATCTTCTCCTGACGAGAATCTTCGTCCTAGTAGGTTCCAGTTTTCCTGCCAG GCAGCAAAAGCTTTCCTAGCAGAGAGGTGGAAGGAAGCCATGGCAGCCGAGCATGTGAAACTGGTCCTAACATTAGACTCCGGTACGTATCTTCAACGAA ATGGCAATGTAGAGGAAACGCTAGTCCATGAATCGTCGTCGTCGATATCGATCGGAGGTGGCAAGGAGTTCCTGAGAGGAAAACCTGAGAAAGGAGTGAA GCTAAAGTACATACCAAAACAAAGAACGTTGAGCTAA
AA sequence Show only first row Show all	>Lus10014974 pacid=23152825 polypeptide=Lus10014974 locus=Lus10014974.g ID=Lus10014974.BGIv1.0 annot-version=v1.0 MPVVKQKAGNTTDVMKSEEGNDSLDTFIRQAMGKEPLLSFPRTNDNPVQWIQLLQALDQQDGPGWPLLTPLKVQMQKCDKCSREFCSSINYRRHVRVHHR LKKLDKDTTKIRNLLDAFWEKLSEDEAKEILSFKDVALEEVSGSSIIKSLMALNRKQGLCPLPQYCLRAGTALLDLIQGRFLYPLSSEELFSILDDASEK MFLCGAAISMEKYIFEGEAAKNGLETKNIVACTSFLVEQKLVKAWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKRLKKLRQKEQRAKEHQQEAKPD TLEEPAELPCSTACSSNSHDMEIPADPFSSSSEPIQLADIEDGDFDLEGQIGYSNGGGAGRIYYPAMGNYRGGRWPQKLQWNSHTPNGFLRKWSRKNRVV EYGWETSIPRTEKLVINQQQPEDDHAKKREVLIGSISVALCSEDSNDREVERKNSRGTVKQWRPVSRKGTKGQAQEDEFAPRESSPDENLRPSRFQFSCQ AAKAFLAERWKEAMAAEHVKLVLTLDSGTYLQRNGNVEETLVHESSSSISIGGGKEFLRGKPEKGVKLKYIPKQRTLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10014974 [exp]	0	1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10037531 [exp]	15.5	0.7985
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	41.2	0.7241
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10001284 [exp]	60.8	0.6893
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	65.2	0.7212
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	75.7	0.6778
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	91.0	0.6847
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10035038 [exp]	151.7	0.6732
AT5G21040		FBX2	F-box protein 2 (.1.2)		Lus10026770 [exp]	170.0	0.6595
AT5G45160			Root hair defective 3 GTP-bind...		Lus10040630 [exp]	194.3	0.6706

Compare expression of checked genes

Lus10014974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.