Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63700 627 / 0 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 395 / 1e-127 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 348 / 1e-108 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G09000 273 / 6e-81 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 271 / 1e-80 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT4G08500 261 / 4e-77 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 254 / 7e-74 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 246 / 9e-72 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 248 / 8e-71 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 237 / 4e-65 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038858 [exp] 1166 / 0 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 814 / 0 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 776 / 0 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 641 / 0 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 638 / 0 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 407 / 2e-126 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 363 / 1e-115 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10019635 [exp] 360 / 3e-113 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 355 / 5e-111 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146700 [exp] 813 / 0 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 786 / 0 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 686 / 0 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 667 / 0 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.005G062500 [exp] 420 / 9e-137 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G106800 [exp] 415 / 4e-135 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G135100 [exp] 361 / 1e-113 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 360 / 1e-113 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 332 / 8e-102 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 325 / 1e-99 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014976 pacid=23152821 polypeptide=Lus10014976 locus=Lus10014976.g ID=Lus10014976.BGIv1.0 annot-version=v1.0 ATGCCTTCGTGGTGGGGGAAGTCATCATCCAAAGAGCTGAAGAAGAAGAAAGGGAGCAAGGAGGGTTTCATTGACTCGTTGCATCGGAGATTCAAAAGTC CGTCCGATGGTAAACTAAAGTGCATTTCAGTAGGTTCTCGACGAAGCTTGAACGACACTGTAGCAGGAGGAAGAGTATCGAAATCTCGACCAGAGTCCAG ATCATCGTCACCTTCCAAGCATGTGTCTAGGTGTCAAAGTTTCGCCGAGAGTACGAATTCGCTACCACTTCCTCTTCCTGGGGTTCATCCTGCAGCAGTG GTACGTGCGAATTCCGAACTCAGTGCAACCGTGAAACCGAGGTTGGAGAAGAGATCCAAGTCATTTTTGTTTCGGCCTTTGCCTAGACCGACCTGCATCC GCAATAATAGGTCAAATGAGGATGATTTAGATGGAGATTTGGTCACTGCTTCGGTCTCCAGTGCAAGTTCGATCGACATTGATGATTTGGCTGATCTTAA TCAACCTAGTGGGGGGCGCAAGGTTATGAAGCCAAGAGAAGCAAAGAAACCAGTGAAGCTCTCTTTGTCGAATAATGGTGCACCCGGCAGTTCAATGTCA AGTCCTTCGAGAAGTCCGCTGAGCTGTTTTGATATCAGCTTGCTTGGGTCAGGACACTGTTCTAGTCCTGGATCAGGTTGCAATTCCGGACAGAATTCGA TTGGAGGGGAAATGATGACAGGGCAGTTATTTTGGCAACAAAGCCGAGGTAGCGCTGAATGTTCTCCAATACCTAGTCCTCGGATGACTAGTCCGGGACC CGGTTCCAGAGTTCAAAGTGGTGCTGTCACACCTATTCATCCAAGAGCCGGTGGTGCAACCATCGAGTCACAGACGAGTTGGCCCGAAGATGGGAAAAAA CAAAGCCATCGTCTACCACTTCCTCCAATTACTATTTCGAATTACTCTCCTTTCTTTCATCCCAACTCCATGGCCACTTCTCCTTCTGTGCCAAGGAGTC CAGGAAGGGCAGAAAACCCAGCGAGTCCTGGACCGCGCTGGAAGAAGGGGAAACTGCTCGGTCATGGGTCATTTGGGCATGTTTATGTTGCCTTTGACCG GGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTGACTCTGTTTTCAGATGATGCCAAGTCAAAGGAGAGTGCCAAACAGTTAATGCAGGAAATTTCTGTA TTGAGCCGGTTACAACATCCAAACATCGTGCAATATTATGGATCAGAACAGGTCGATAACAGACTTTACATATATCTCGAGTATGTGTCTGGTGGATCTA TCAACAAAATTCTCCGGGAGTATGGTCGGTTGGGCGAGCTAGCAATTCGCAGTTACACCCAGCAAATCTTGTCAGGCCTTGCATTCTTACATTCCAAAAG CACTGTACATAGGGATGTTAAAGGAGCAAACATTTTAGTGGATCCAAATGGTCGCGTAAAATTAGCAGATTTCGGGATGGCTAAGCATATCTCGGGGCAG TCATATCCCCTATCGTTCAGAGGGAGCCCTTATTGGATGGCACCCGAGGTTTTAAACTCCTCGAATGGCTACAATCTTGCTGTGGATATATGGAGTCTTG GATGTACTGTTATAGAAATGGCCACAGCTAAACCACCATGGGGCGAATATGAAGGGGTTGCTGCTCTGTTCAAGATTGGAAACAGTAGAGATCTCCCTGA AATTCCAGATCAACTCTCGGATGATGGGAAGGACTTTGTTAGGCGATGCTTGCAAAGGAACCCATCAAATCGGCCTTCAGCTGCTCAATTATTGGGCCAC CCGTTCGTTAGAAATGCTGCACCTTTAGAAAGATATGCCCTTTGCCCTGATGCTATAGAGCCACCTCCTGGTGTGACGAATGGAGTGAATGATCTGGGAA TTAGTCAAGCTAGAAACTTCTCTACCTTAGATACTGAAGGACTTGCTGTTCATTCGTCTAGAGTGTCGAGAGCCTCAAGGCGAGGTTTTTATGCCAGTGA CATCCATATCCCGAGGAACAACATTTCGTGCCCTGTCTCGCCCGTTGGGAGTCCTCTTCTGCGTTCAAGGTCTCCGCACCATCTCAACGGAAGAATATCT CCGTCGCCTATATCCAGTCCGAGAACCACCCCGTCAACACCTCTTACCGGTGGCACCGGTGCAATTCCTTTCAATCACATGAAGGGTTTTGCAAACATGT CGAATGGTATGTACCTGAATGGCCATTCGTATAATAACGATGCTGCTCCTGACATGTTCCGAGGAATGCTGCCCAACATTTTGTCTGAGCCTGGACGCGA AACTTACGACGGTCAATCAGTCTTGGCTGATAGGGTGTCTCGCCAGCTTTTGAAGGATCTTACGAAGATGCATGCGCCCTTGGACCTCAGCCCTAAATCA CCTTTGCCCAGTAGGAACAACGGAGTCTAA
AA sequence Show only first row Show all	>Lus10014976 pacid=23152821 polypeptide=Lus10014976 locus=Lus10014976.g ID=Lus10014976.BGIv1.0 annot-version=v1.0 MPSWWGKSSSKELKKKKGSKEGFIDSLHRRFKSPSDGKLKCISVGSRRSLNDTVAGGRVSKSRPESRSSSPSKHVSRCQSFAESTNSLPLPLPGVHPAAV VRANSELSATVKPRLEKRSKSFLFRPLPRPTCIRNNRSNEDDLDGDLVTASVSSASSIDIDDLADLNQPSGGRKVMKPREAKKPVKLSLSNNGAPGSSMS SPSRSPLSCFDISLLGSGHCSSPGSGCNSGQNSIGGEMMTGQLFWQQSRGSAECSPIPSPRMTSPGPGSRVQSGAVTPIHPRAGGATIESQTSWPEDGKK QSHRLPLPPITISNYSPFFHPNSMATSPSVPRSPGRAENPASPGPRWKKGKLLGHGSFGHVYVAFDRESGEMCAMKEVTLFSDDAKSKESAKQLMQEISV LSRLQHPNIVQYYGSEQVDNRLYIYLEYVSGGSINKILREYGRLGELAIRSYTQQILSGLAFLHSKSTVHRDVKGANILVDPNGRVKLADFGMAKHISGQ SYPLSFRGSPYWMAPEVLNSSNGYNLAVDIWSLGCTVIEMATAKPPWGEYEGVAALFKIGNSRDLPEIPDQLSDDGKDFVRRCLQRNPSNRPSAAQLLGH PFVRNAAPLERYALCPDAIEPPPGVTNGVNDLGISQARNFSTLDTEGLAVHSSRVSRASRRGFYASDIHIPRNNISCPVSPVGSPLLRSRSPHHLNGRIS PSPISSPRTTPSTPLTGGTGAIPFNHMKGFANMSNGMYLNGHSYNNDAAPDMFRGMLPNILSEPGRETYDGQSVLADRVSRQLLKDLTKMHAPLDLSPKS PLPSRNNGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	0	1
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	1.4	0.9525
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	1.4	0.9479
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	2.4	0.9401
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	2.8	0.9390
AT5G21030			PAZ domain-containing protein ...		Lus10025537 [exp]	4.2	0.9309
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	4.5	0.9329
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	5.9	0.9301
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	6.7	0.9245
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10014278 [exp]	8.0	0.9283
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	8.5	0.9283

Compare expression of checked genes

Lus10014976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.