Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33530 57 / 7e-09 F-box family protein (.1) AT1G61060 50 / 6e-07 F-box family protein (.1) AT3G10240 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT4G19940 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT1G11270 47 / 4e-06 F-box and associated interaction domains-containing protein (.1.2.3) AT1G30790 48 / 5e-06 F-box and associated interaction domains-containing protein (.1) AT5G10340 46 / 3e-05 F-box family protein (.1) AT1G53815 45 / 3e-05 F-box family protein (.1) AT5G22791 45 / 3e-05 F-box family protein (.1.2) AT3G47150 45 / 4e-05 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038938 [exp] 114 / 1e-28 AT1G49790 63 / 7e-11 F-box associated ubiquitination effector family protein (.1.2) Lus10016866 [exp] 99 / 2e-22 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10034309 [exp] 97 / 3e-22 AT4G38870 84 / 4e-18 F-box and associated interaction domains-containing protein (.1) Lus10041462 [exp] 92 / 4e-22 AT1G30790 47 / 3e-07 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 94 / 5e-22 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 96 / 7e-22 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10014984 [exp] 90 / 8e-22 AT1G33530 46 / 1e-06 F-box family protein (.1) Lus10011197 [exp] 93 / 7e-21 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 91 / 3e-20 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G093100 [exp] 52 / 3e-07 AT1G50870 80 / 2e-16 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 51 / 6e-07 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G199601 [exp] 47 / 6e-07 AT3G06240 61 / 2e-12 F-box family protein (.1) Potri.001G458400 [exp] 49 / 2e-06 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.019G062900 [exp] 49 / 3e-06 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.001G318400 [exp] 49 / 3e-06 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 47 / 9e-06 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.010G154500 [exp] 47 / 1e-05 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 47 / 1e-05 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 46 / 2e-05 AT3G16210 92 / 2e-20 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10014979 pacid=23152809 polypeptide=Lus10014979 locus=Lus10014979.g ID=Lus10014979.BGIv1.0 annot-version=v1.0 ATGATTCACTCCCTGTTTTCCAACCGCATAGCTAATAGTTTAGCTGCTGTTATGGGAGATGCTCTATTACGAGAACGGAGCTTTAAGGTGCTCTTCATGG GGATGTTGGTTATAGAACGGATCGACCTCCAACTTGACTCAAAGGAACGGATCAGTGAATGGATCGATGAAGACGAGGATGATCAAGAGCAGATTCAGAT TCAGAAGAAGACGCTGATGATATCTCTTGATCAAAGTTCAATTGCCGTCGACGAAGATGTGTTGGTTTCCCATATACTCACCAGACTCCCAGTGAAATCG CTGATGAAGTTCAAATGCGTCTCCAAAGGTTGGAAATCCACTGTCGAGACAGATTCGCACTTGATCGATTTACACCACCGCAGCCATTCAGAATCACGCC CGCCAGGTTTTTTAATTGTGGTTTCCCCCTTTGAACCGAAATTCATTTCCAATAGGGTGAAGAGGAGGGACAACGACGATTTGTCTTTCTTGTCAGCTGA TTTGGATTACAGTCGTCGTCAGTTAAATGTCCACAACGTAAAGAGGATACAGTCGTCAGTGCTGCTTAAATGTTTGGGACCTGTTACAGGGTTGCTCTGT TTGGCTGACGACTCCGCGGTACAGATATTCAACGTCGGCACTGGAGAGGTGACCACGCGGACCATGTCAATTGCTGAAAATCTCAGGTGCTCCTCCTACG ACCGATTAGTAGAAATGGAGGGGTGTATAACCATGGTAAGTCGAAGATATCAAACGGTGAAGATGTGGAAGTTTCATGATTACAACAAGGAGGAGAATGG AAGTAGTAGTGAAAAAGATTGGAGCGAAGTGGTGGATATCAGACTACCTGATGAGATAACTACTGATGTGTTTCTTTACTTTCACCCGATACCTGGGAAA CGCCAGCTGATCTTGGAAACCTATGTTTCATCACCGGTCTTAGAGACTGATCATTGGCTAGCGTAA
AA sequence Show only first row Show all	>Lus10014979 pacid=23152809 polypeptide=Lus10014979 locus=Lus10014979.g ID=Lus10014979.BGIv1.0 annot-version=v1.0 MIHSLFSNRIANSLAAVMGDALLRERSFKVLFMGMLVIERIDLQLDSKERISEWIDEDEDDQEQIQIQKKTLMISLDQSSIAVDEDVLVSHILTRLPVKS LMKFKCVSKGWKSTVETDSHLIDLHHRSHSESRPPGFLIVVSPFEPKFISNRVKRRDNDDLSFLSADLDYSRRQLNVHNVKRIQSSVLLKCLGPVTGLLC LADDSAVQIFNVGTGEVTTRTMSIAENLRCSSYDRLVEMEGCITMVSRRYQTVKMWKFHDYNKEENGSSSEKDWSEVVDIRLPDEITTDVFLYFHPIPGK RQLILETYVSSPVLETDHWLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33530			F-box family protein (.1)		Lus10014979 [exp]	0	1
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	1.0	0.7728
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	13.7	0.6989
AT1G72890			Disease resistance protein (TI...		Lus10009384 [exp]	15.4	0.7084
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	19.0	0.6568
AT5G38260			Protein kinase superfamily pro...		Lus10025492 [exp]	20.6	0.6864
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	22.0	0.7041
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	28.8	0.6723
AT5G47090			unknown protein		Lus10021704 [exp]	33.5	0.6927
AT4G25030			unknown protein		Lus10034730 [exp]	39.5	0.6850
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	41.1	0.6757

Compare expression of checked genes

Lus10014979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.