Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 535 / 6e-178 Myosin heavy chain-related protein (.1) AT5G41140 356 / 2e-108 Myosin heavy chain-related protein (.1.2) AT1G63300 281 / 1e-80 Myosin heavy chain-related protein (.1) AT1G22060 116 / 3e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038860 [exp] 1506 / 0 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10027462 [exp] 959 / 0 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10039218 [exp] 956 / 0 AT5G52280 618 / 0.0 Myosin heavy chain-related protein (.1) Lus10024517 [exp] 289 / 2e-83 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 279 / 9e-80 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 253 / 2e-70 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 223 / 2e-60 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10033461 [exp] 127 / 2e-29 AT1G22060 978 / 0.0 unknown protein Lus10013651 [exp] 112 / 9e-26 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143800 [exp] 767 / 0 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 449 / 3e-142 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 424 / 1e-132 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 292 / 4e-85 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 125 / 7e-29 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 120 / 2e-27 AT1G22060 1031 / 0.0 unknown protein Potri.006G120400 [exp] 90 / 6e-18 AT1G22060 121 / 2e-27 unknown protein Potri.008G029800 [exp] 79 / 1e-14 AT1G22060 117 / 5e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014980 pacid=23152778 polypeptide=Lus10014980 locus=Lus10014980.g ID=Lus10014980.BGIv1.0 annot-version=v1.0 ATGTTCAAGTCATGGAGGAGCAAGGAGAAGTTCAAAGCTATATTCCAGCTGCAGTTTCAGGCAACGCAGGTGCCGAAGTTGAAGAAGCCAGCTTTGACTG TGGCTTTGGTGCCGGAGGATGTGGGGAAGCCGACATTCAAGCTAGAGAAAACTGCAGTCCAGGAAGGGATCTGCTTGTGGGAGAATCCTGTATATGTTAC AGTGAAATTCGTCAGGGAGCCCAAGACGGGGAACCTGCACGAGAAAATATATCATTTCATCGTCGCTAGTGGATCGGCCAAGAAAGATTACCTTGGGGAA TCTTCAATCGATTTTGCAGATTTTGCAGAGGAGATTGAACCAGTGACCATCTCTCTGCCACTGAAGTTTGCCAATTCCGGTGCAGTTTTACATATAACAA TTCGGAAAGTTCAAGGAGGCATCGAGCAAAGGGGTAGTAATGGAGAAGCAACAGTACCTGAGGATGGAAGGTCGGTTAACCAGTTGAGCATAGATGGGCC AAGCATAGATGGGAAGAATTTTGTAGAAGAGATAGATGATTATGAGAACGACGACAGCTACAGAACATCTACTGACAAACTCAGGTCACTAGCGAGACAA AATGCGATGCTTCAGAGGGAAGAAAGCGACGTTGCTGATGCAACGAACAATCACCAACACCGAAGATCTGGCACAGAATGGTCAACGGGGTCAGGCTCAG ATGGAAGTCTGGTCGATTCAGCAAACAGCCTTGGAGAGAATGTTCCAAGACAGTTAAATGAAGCTACATATGAATCCACTCAGAAGCTGAAAAGCGAAAT TCTCAGTCTAATGCGACAATCAGAGCTATCTGAAATGGAATTGCAGACCCTTCGGAAACAAGTAACGAAAGAGAGCAAAAGAGCACAGGACTTGTCAAGA GAGAATATGAACATCAAAGAGCAGAGAGATGCAATCCAAAGAAAATGTGAAGAGCTTAAGTACTCTGTAGAAGCAGAGGCTCTGGACCGAGTACGAGCAG CACATGAAGGGTCAAGGGTTAAGATAGAAGAGATGAGACAGGAGCTTACCCATGAAAAGGAGTTGAAGTTTGATGTCGAGTCGCAATTACAGAAGATGCA AGAATCCAATTCGGAGTTGATTCTAGCAGTGCAGGACCTTGATAATATGTTGAAGGAAAAAGATGTGGAAATATCTGTTCTTTACAGCAAGCTGGAATCA AGTGAGCAGGATAAAGAAATCCAGTGTAAAAAATGCAGATGCAGTACAGAAGGCAGTGAATTAACTGGAGATCAAGATGATACCACTAGCAGTGAAGTAT ACTTGCTTAAGCAACAGACAGCTGATCTGTCTGACGAAATTGATGCCTACAAAGAAACCAGGGAAAGGCTGGAGAAGTACATAGAGCAACTAACACAAGA TTATGAGGATTTAAAACAAGAAAACCACCATATATCCGATGAGTTGAAGGAGAATCATCAACAACAATTGCAGGCACAAAATGAACGATCCCAGTATATG GGCGCTATTGAGGAACTTGAATCGCAGCTGCATGGACTAGAAAAGGAACTAAGAGAACAGACAACAGAGGCGTTGAGGAAGACGAGATGGAAAAATGCCA GCACAGCAGAGCGACTCCAGGAGGAATTTAAAAAGGTTTCATTGGAGATGGAAGATAAGATTGATGAGAATGAGAAGCTTATGGCAAATGCTGTCGCAGA ATCAGAGAAGCTCAGGTTGCAGAATAGAGTCTTGGAAGAGAAGCTCACCAAAGCTAATGAAGAGATCGCACGAATTAAAGACCAGACCAAAGTAAGAGTG GAAGAACTGTCAACTCAACTTGCTCTGAAGACTAAAATGGCAGAAGAGATATCGTTGGAAGTAGACGAGAAGACAGGACAACTGCAAAAATTGCAAAAGG AAGAGAAAGACAGGCAGGAATCTTTCTCGAGGGAAATTAAAATGCTCAAAGAAAAAATAGAAATACTCATAGCAAACGCCTCCAGTCAACCAGGAGAAAA ATTGAAGGATGAGCCGAAACAAACAAAGACAGCACTTGGAGAGACAGCACTGCAACGAGAAAGATGGGGCAAAGAGAAAAAGGAATTGGTTAGAAAATAC GCATCAGCTAAGAAAGAAAAAGAGAAGTTTCTTAAAGAGTATGAAAACTTGAGGTTAGTGAAGGATGAAAGGGACACAACGCTGAAGAGGCTACAGTTGG AAATAGAAGGGCTCAAAGACCAACATAATAAGTTAACACATACCCTGTCAGAAGACAAATTGGAGAAAGAGAACCTGCGGAAGCAAATAGTTCAGTTGAC AGGTGACCTGCAGAAGAGTAACAATGGACTTCCAAGGGAAGAATCACTTCATACAGGAACAGGACAAGAGGCTGTTCAAAAACGGAATGCAAAGACAAGC TCAAAGCAACAACAGGACAATGTTAACCTGACACAGAGGCTGGATGAAATGGCACAGCTCAAGGAAAGGAATAAACGTATGGAATGTGAATTGAAAGAAA TGGAGGTGAGATATTCAGATATAAGCCTAAAATTTGCAGAGGTAGAAGGAGAAAGGCAACAACTGGTCATGACTGTACGAAACCTGAAAAAACGGTAA
AA sequence Show only first row Show all	>Lus10014980 pacid=23152778 polypeptide=Lus10014980 locus=Lus10014980.g ID=Lus10014980.BGIv1.0 annot-version=v1.0 MFKSWRSKEKFKAIFQLQFQATQVPKLKKPALTVALVPEDVGKPTFKLEKTAVQEGICLWENPVYVTVKFVREPKTGNLHEKIYHFIVASGSAKKDYLGE SSIDFADFAEEIEPVTISLPLKFANSGAVLHITIRKVQGGIEQRGSNGEATVPEDGRSVNQLSIDGPSIDGKNFVEEIDDYENDDSYRTSTDKLRSLARQ NAMLQREESDVADATNNHQHRRSGTEWSTGSGSDGSLVDSANSLGENVPRQLNEATYESTQKLKSEILSLMRQSELSEMELQTLRKQVTKESKRAQDLSR ENMNIKEQRDAIQRKCEELKYSVEAEALDRVRAAHEGSRVKIEEMRQELTHEKELKFDVESQLQKMQESNSELILAVQDLDNMLKEKDVEISVLYSKLES SEQDKEIQCKKCRCSTEGSELTGDQDDTTSSEVYLLKQQTADLSDEIDAYKETRERLEKYIEQLTQDYEDLKQENHHISDELKENHQQQLQAQNERSQYM GAIEELESQLHGLEKELREQTTEALRKTRWKNASTAERLQEEFKKVSLEMEDKIDENEKLMANAVAESEKLRLQNRVLEEKLTKANEEIARIKDQTKVRV EELSTQLALKTKMAEEISLEVDEKTGQLQKLQKEEKDRQESFSREIKMLKEKIEILIANASSQPGEKLKDEPKQTKTALGETALQRERWGKEKKELVRKY ASAKKEKEKFLKEYENLRLVKDERDTTLKRLQLEIEGLKDQHNKLTHTLSEDKLEKENLRKQIVQLTGDLQKSNNGLPREESLHTGTGQEAVQKRNAKTS SKQQQDNVNLTQRLDEMAQLKERNKRMECELKEMEVRYSDISLKFAEVEGERQQLVMTVRNLKKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	0	1
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10039151 [exp]	2.4	0.8718
					Lus10015658 [exp]	3.7	0.8830
AT1G74160			unknown protein		Lus10017857 [exp]	4.2	0.8573
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	4.5	0.8551
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10002633 [exp]	4.9	0.8423
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	6.0	0.8567
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	6.5	0.8454
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10012245 [exp]	7.2	0.8070
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	7.3	0.8482
AT1G74160			unknown protein		Lus10034677 [exp]	8.9	0.8148

Compare expression of checked genes

Lus10014980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.