Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52290 416 / 3e-122 SHOC1 shortage in chiasmata 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038861 [exp] 2366 / 0 AT5G52290 439 / 3e-130 shortage in chiasmata 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141100 [exp] 999 / 0 AT5G52290 506 / 2e-154 shortage in chiasmata 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014981 pacid=23152837 polypeptide=Lus10014981 locus=Lus10014981.g ID=Lus10014981.BGIv1.0 annot-version=v1.0 ATGCGAACTCGATTCCTGAACATAGACTACTTCAGTTCCCCTCCGCCGCCTCCTCCTTCTTCTCCGTCCGCAACCTTAAATTTCGTCGAGCTCCCGGTTC CTACCTTCCCTCCTCCGCGTATCTTCACCGTCGAGGACTATTTCCATGGCCTCGAAGAAGCTGCTGCCGTCTCGCTTGAGATCGAGAAGTTGCCTATCGA AACAGCTCTATCGAAGTTCATCGCTGCCGTACTGCCTCAGGTGATCGATGTTGACGTTCCTGAGCTCGAGGACTTCTCCGCCGCCGAGCATGGGACGTTC GTCGTCAGGAGTGAACAGATCGAGAATGGCGATGGCTGTAGAATGGCTGATAAGAGTACACACGGTGGTGAATTCATCCTGTTTGAAGTACCCGAGCTTG ATGTGTTTGTGGGAGCCAGACACCCGTCTGTGGATGTTATCCAGAGTCTATCTGAAGTCTCATATATCGAAAATAATCAGGATCTGCCCTGGTCAGTTCT TAAAACACAACATTTGCAGAAGGTTCACGAGTCAATTTATTCAGAAGCTGAAGTATCCATAGAGTTTGACATAAATCAAAATATTCCCGGTAGTCATGAA GATGATGGTTCTATCCAGATGAAAAATGCGTCAGATCATGACTTATTCCCTGCTTTAGAGGTCAACGAAACAAATCTTAGAACCTTCACTGGCTGCTATA TTGAACGACGGTTCCTATCATTTCTAGAAAACGTGGAAATCCAGGTTCCGAGTAATGAGCTTGAGGATTTTCAATCCTTGAAGGGTGATAACTTTGAGGT TCCCAGGGACCATTGTCTATCAAAGGAATGCCTCAATGCCGATATGGCATCGTTGGATTCAGCTTTTGTACTGGACAATATAAGCATTACAGAAGCTGCA TATTGTGAAGAAGACTGCAATCCAGCAGAGCCAATTATTTTCCATGAACCGGAGTTCATTGGAACACATTCATCTAAAGTTGTGGAGAGCTTCTTCAATA TGCAAAAGAGTTGTGAACCGGGAATAAGTGACCTGATGATCCACAAAGAATTGAACTCCAGGAGTTTTAATGAGTTGGTTGTTTCTTCTGAGCTGGCCCT AATAGACGACAGTTTCAGAACATTGCCGGTACCTATTCTTTTTGACCATGATAGGACAAGATCAATGCATACCATTCTTGGAAGAATACTCATGGGACTA AAGGAACGGCCCCTTTCTACATCTGATAATATCTACTTGGATTGGCATTTTCTGGATGCTGACATATGCAACTGTAAAATTTCTTGTCACCGTCTTATTG TGGAGGATTTGGATTCTCACAGCACAAATCTTGACATGGTATCTCTTGATGATGGAAAGCCGATGCTTGATTTTATTCTTTCTGATGATACGTTGTTCAA GATGGAAGACCATAAGGAATCACTGGATGTTCTTCCTGAAGGCTTGCATGACTCTTCAAGTACGTGCCTGGGTGGCAGATTTCCTGAATCAGGGAAGTTT CAGCCATTAGATGATGAAGTTCGCGGGAAGGCTTCAAAGTTATTCAAGTCCATGTCGCAGTTCAATGATTTTGAGTTTTTCTTGAATCCTGGAAAAGCTA CTGCTAGGGAGAGAAGTAGATCAGCAGCTGAGGCGTGTAATATTAATCCTCCACTTCCTGAGAGAGTGCCTCATCTGGGAGAAAATGTGAGCCAACAGTG TCTGGATCCACAGTTGAAATCCATACCTGTGGTGCGTACGCTCGAGAAAACATCTGCAGAAGCATCATATAAAGTAGCCAAACAGGGTCAATGTGTTCCC AGCGCAACTAAATCTGAGAGTACTCAAGGAAGGAAGGTTTCTGGCCCTGAGACTGTCATTGTCGTAAATACTCAAAACTTTGGTAAGGAAATGATAGTAT CCAGAAGAAGTACATACAAAAAGCTTCTAGCAATGGAGAAAGAAGGAACAGAAGTCATTGAACGTGACATAGATCTCCCTGTAGATGTGCTGATTAGTTC TGCCATGTGCCTAGCTTGGTACAACTGCAAATCTATTAGAAAGCAAGCGACTACTTTGGGTGAAGCTTCGTCATGCTTTCGTTTGTGCATTGACAATATT GCTACGCAAGTTCTGACTCTGCTGAGTTTCACTTTCAAGGGCTGCATTCTGGTATTTGAGGGGGAAAGTGACTTTCTTTCTGCCGTGATGGAATCTTCAG ATGGACTTTATGCGGCAGCAGCAGGCCTTGGGATAGATTTACAGATGTTCTGTTCATATTCATCGGAGTTGACTGATGAAATAATTTTGAGCAGTGTTTT CCATTCAACCAAGGAGGGCAGGAGCAAATGTCCTGAAATGCCCGAATCAGAAACTCTTGCAGAATCCTTCCTCACCAAATTTCCTTCAATTAATCCGTTG ACAGCTCATGCAATACTGTCATCAGTAGGGACGCTGATCGACTTTCTTGAGTGGTCACATGAGCATAGGATCCTTGCGGTCAAGCAGCACCATATTCCTG AAGAAAGCATTGCACTCTTTGGTTCCTTGTGCAAATATGGAGCGAGGGAGGATTCTAAATCTGCAATGACAGACTCCATCTCCTCTGTATCAACTGGAGC AGACTCGGATAAACATCATCTGGGTTTAGATTCTGAAGGGAAGGGGAGGAAATATGTCTTTAGCCCTCCAAATATGGACAAATGCTTGGATGACGAGTGG CACTTTGAGCCAGCAGAAAATTCGACCAAGAAAAGAAATCTTCCACCTGCGGCAATGCTACAAAAGGATCATTGGATGCCTGATGTGAATGACATCCTTG GTGAGTTGAAACAGCCTATCTCAAATCTGACAGACTTTCTTGAACAAGAATCAAATGCTGCTACGGCAGTTGATTTTTCCAGTATGCCTGAGCAATTTGG TGCAATGGAAATGGATAGAATTACTAACAATGGGAAATCATTGAATAGGTCTGTCGATCAAAACCGGGGATGTGGTGTGCCTGTCAGGAAGAGGTTGAAG AAGTACAATACCAGTGTATCTGAGAATCTGCACAAGGACTTCAAGGGAGTTACTATTGATCTTACTAACAGTCCCTCACCAGATAAAGAGGTTCCTTCAC TGACAAATTCCTCAGATATATCCTCATGGCTGTGTGAAGAAGATCAAGATTTCACCACTAAACCTAAAGCTGCCCGAAAACTGTCATATAATGGGAATAG TCTGTTCACTTTCCCAACTGCAGGTGAGATAAATTCTGAACCTGACCTGTGGCCGTACTTTAAGGATCATGGACAAAATTTGCAGGACAATCATGGGTTC TTTGATTTCAATAATAACCAGGAGAAAGTAGCTTCAAAAGTACGGAACAAAGTCCTGACAGAGATTCCAGTTAACCGAAATGCTGGAACTCCTGTACGGT TTCCTATGAAAGAGATGCCACATTACGGTCCAGCATCACTCACAGAAAACGTGCATTCTTCTCAGCCAGCACGTGGTGAATCGCCATTTTCTAAAGCCAT TCATTCTTCTCAACCACAGGCTAGTTCTCCATGGACAATTGAGTTTCTTAATAGAATCAGAGAGAAATCCAGATTGCGGAAGCTTTCCTTGACAAATGAT GCATCTCCCACCTTTCCTTGCGCTACAACTAATGCATCTAAAGCTACCAAGACGAAAAGCCCATCCGTCCTTGACTATTTCAAGTACCAAGGTGGCCGCA CTCCTCAGAGAAAATCTGGACCCACGAAGCAGAAGCTACCTATCCGACCATCAAGTGCATCAAGAACTGAAAGAGTTGGAGCATCTCTTTCTCCAATACG CACGCCGATTGACAGGAGCGCAAAACAGACTCTGTCTTTTGAACCGAATGGTAGTGGAAGCCAGACTAAGCTAGTATGGACTGACGGTGGTGCGCGACCT TTGAGCAAAAAGATGAGGACTTTCTAA
AA sequence Show only first row Show all	>Lus10014981 pacid=23152837 polypeptide=Lus10014981 locus=Lus10014981.g ID=Lus10014981.BGIv1.0 annot-version=v1.0 MRTRFLNIDYFSSPPPPPPSSPSATLNFVELPVPTFPPPRIFTVEDYFHGLEEAAAVSLEIEKLPIETALSKFIAAVLPQVIDVDVPELEDFSAAEHGTF VVRSEQIENGDGCRMADKSTHGGEFILFEVPELDVFVGARHPSVDVIQSLSEVSYIENNQDLPWSVLKTQHLQKVHESIYSEAEVSIEFDINQNIPGSHE DDGSIQMKNASDHDLFPALEVNETNLRTFTGCYIERRFLSFLENVEIQVPSNELEDFQSLKGDNFEVPRDHCLSKECLNADMASLDSAFVLDNISITEAA YCEEDCNPAEPIIFHEPEFIGTHSSKVVESFFNMQKSCEPGISDLMIHKELNSRSFNELVVSSELALIDDSFRTLPVPILFDHDRTRSMHTILGRILMGL KERPLSTSDNIYLDWHFLDADICNCKISCHRLIVEDLDSHSTNLDMVSLDDGKPMLDFILSDDTLFKMEDHKESLDVLPEGLHDSSSTCLGGRFPESGKF QPLDDEVRGKASKLFKSMSQFNDFEFFLNPGKATARERSRSAAEACNINPPLPERVPHLGENVSQQCLDPQLKSIPVVRTLEKTSAEASYKVAKQGQCVP SATKSESTQGRKVSGPETVIVVNTQNFGKEMIVSRRSTYKKLLAMEKEGTEVIERDIDLPVDVLISSAMCLAWYNCKSIRKQATTLGEASSCFRLCIDNI ATQVLTLLSFTFKGCILVFEGESDFLSAVMESSDGLYAAAAGLGIDLQMFCSYSSELTDEIILSSVFHSTKEGRSKCPEMPESETLAESFLTKFPSINPL TAHAILSSVGTLIDFLEWSHEHRILAVKQHHIPEESIALFGSLCKYGAREDSKSAMTDSISSVSTGADSDKHHLGLDSEGKGRKYVFSPPNMDKCLDDEW HFEPAENSTKKRNLPPAAMLQKDHWMPDVNDILGELKQPISNLTDFLEQESNAATAVDFSSMPEQFGAMEMDRITNNGKSLNRSVDQNRGCGVPVRKRLK KYNTSVSENLHKDFKGVTIDLTNSPSPDKEVPSLTNSSDISSWLCEEDQDFTTKPKAARKLSYNGNSLFTFPTAGEINSEPDLWPYFKDHGQNLQDNHGF FDFNNNQEKVASKVRNKVLTEIPVNRNAGTPVRFPMKEMPHYGPASLTENVHSSQPARGESPFSKAIHSSQPQASSPWTIEFLNRIREKSRLRKLSLTND ASPTFPCATTNASKATKTKSPSVLDYFKYQGGRTPQRKSGPTKQKLPIRPSSASRTERVGASLSPIRTPIDRSAKQTLSFEPNGSGSQTKLVWTDGGARP LSKKMRTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	0	1
AT1G33530			F-box family protein (.1)		Lus10014979 [exp]	1.0	0.7728
					Lus10008258 [exp]	5.7	0.6247
					Lus10012497 [exp]	6.0	0.7076
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	13.6	0.6499
AT5G50970			transducin family protein / WD...		Lus10032536 [exp]	20.7	0.6835
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10000583 [exp]	21.4	0.6240
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10010902 [exp]	30.2	0.6497
AT2G27090			Protein of unknown function (D...		Lus10025550 [exp]	34.2	0.6354
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10016736 [exp]	34.6	0.6465
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	39.7	0.6237

Compare expression of checked genes

Lus10014981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.