Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038862 [exp] 250 / 2e-73 AT5G52300 76 / 8e-14 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141300 [exp] 48 / 1e-05 AT5G52300 164 / 2e-43 RESPONSIVE TO DESSICATION 29B, LOW-TEMPERATURE-INDUCED 65, CAP160 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07918 [flax] [poplar] CAP160 CAP160 repeat
Representative CDS sequence Show only first row Show all	>Lus10014982 pacid=23152816 polypeptide=Lus10014982 locus=Lus10014982.g ID=Lus10014982.BGIv1.0 annot-version=v1.0 ATGGATGCTCAATTAACACGACCACACGATCACCACCACCATGTAGGAATCCACACTGGGATGGAGGAAGGCCACGCGCACGAAGGGGAGCAGCACCCTC ACGGGGTGAAAGGTGTGCTGAAGAAGGTCAAGCGGAAGGCTAAGAAGGTTAAGGAAAGCCTTACTGGACACGGTGGCCATCACGAGGATGATCATCCTCG TGATGTGCCCAATGATCATGATCTCGACGAGGAGGATGATGATGAGGACGAAGAGATGGTTGAAGATCCGGCCGTTCATGGAGTTTCTGGGCATGAAGCT GCTGTGGCTGCCGGCCTTGGAAGCCGTCACACAGGAAGGTCGGAGGCAATGCCATTAGGCTATTCCGGCGGCGGTGATCCTATGAAGATGTCACCTATGG AGGCAGAGGAAAACAGGGCAGGAGGCAGAGTAGGGCATCACAAGCTGACCGATATAACCGAAGAGCCACGAGCTCCGTTTAGTAGTCCGATGACTCATGG AACAGCCGATCATCATCCCAAAGGTAGTGATCACCAAATGCGAGCTAGACCGGCGTTCGAGGATCAACATCCCAAAGGCGGTGATCAGATGCGAGCTAGA CCGGCATTCGATACTCCGATAACAACCGACCAACATCTCAAAGGGGATGACCAAATGCGAGCTACATCGAAGTTCGATTCTCCGATGATGACCGATCAAC ATACCAAAGGCGGTGATCACCAGATGCGAGCTAGGTCGACATTGGATACTCCAATGACAACGCCTAATCATCGTACCAAAGGTGGCGACGAACGCGACGA ACGCGCTAGGTCCTTCGTCGGCCAACAAGAGAAGGATAGAGGACACCTTCAAGTCACATTTGATGAGCCATTGGTGGAAGATCCTCATGGGCCGAAAGGC CGGTTTGGTGGTCGTCGATCACCTCCGAATTACCAGTCGAAAACCATTGATCGAAGTGGTCAGGGCTACGGTACCGGTGAGAGAATCGAAGATCAAACTC AGATCCACAATCCAACGGCTGTAGAACACCCTCATGATCATTCTACAATTGATCACCCGCCACCGCAGGAGAACCAGAGCGGCTACACGGACAAGATCTC CTCTGCCGCATCGGCGATCGCGGGGACAGCAGCCGCCGCCAAGAACGTGGTCGCGTCGAAGCTCGGGTATGGAGGCGGCCATGAGGAAGAGGAGGGGGAG CAGAGGAAGAAGCCGATGGGGGTGGTGACGGAGTCGGAGGAAGTGAAGAGGCGGCTGGGGAGAGGCGGGAGGAGGGAGGAAGACATGGAGGTGGAGGATA TTTCAGTGAGTGTTCCGGAGACGAGGGGAGTTGTGGGGAGGATGGTGAAAGGAGCTGTGGAGTCGTGGTTTGGGAAAGGGGATGGCAACAACAACGGTGG ACATGATGGTAATGGTGATCGTTCTAACGTTGATCATCGCCGGCCGTCATCTGAAAAGACCATTGGGTCGTCAACTGGGACTGAAGGGTTTACAGAGTCG GGGAATACTGCTGGAGGCAGAGTTCTTCAGGAATCAGGAAACTGA
AA sequence Show only first row Show all	>Lus10014982 pacid=23152816 polypeptide=Lus10014982 locus=Lus10014982.g ID=Lus10014982.BGIv1.0 annot-version=v1.0 MDAQLTRPHDHHHHVGIHTGMEEGHAHEGEQHPHGVKGVLKKVKRKAKKVKESLTGHGGHHEDDHPRDVPNDHDLDEEDDDEDEEMVEDPAVHGVSGHEA AVAAGLGSRHTGRSEAMPLGYSGGGDPMKMSPMEAEENRAGGRVGHHKLTDITEEPRAPFSSPMTHGTADHHPKGSDHQMRARPAFEDQHPKGGDQMRAR PAFDTPITTDQHLKGDDQMRATSKFDSPMMTDQHTKGGDHQMRARSTLDTPMTTPNHRTKGGDERDERARSFVGQQEKDRGHLQVTFDEPLVEDPHGPKG RFGGRRSPPNYQSKTIDRSGQGYGTGERIEDQTQIHNPTAVEHPHDHSTIDHPPPQENQSGYTDKISSAASAIAGTAAAAKNVVASKLGYGGGHEEEEGE QRKKPMGVVTESEEVKRRLGRGGRREEDMEVEDISVSVPETRGVVGRMVKGAVESWFGKGDGNNNGGHDGNGDRSNVDHRRPSSEKTIGSSTGTEGFTES GNTAGGRVLQESGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014982 [exp]	0	1
AT1G05577			Domain of unknown function (DU...		Lus10037468 [exp]	8.4	0.7362
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10013211 [exp]	21.8	0.7426
AT5G17760			P-loop containing nucleoside t...		Lus10041777 [exp]	89.9	0.6859
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	105.7	0.7343
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033483 [exp]	148.2	0.6982
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	157.5	0.6857
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	160.9	0.7090
AT3G02840			ARM repeat superfamily protein...		Lus10021822 [exp]	168.9	0.7097
AT3G18670			Ankyrin repeat family protein ...		Lus10019888 [exp]	175.7	0.6994
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	188.3	0.6848

Compare expression of checked genes

Lus10014982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.