Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18480 418 / 2e-145 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT1G07010 162 / 5e-46 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038865 [exp] 583 / 0 AT1G18480 496 / 5e-176 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031284 [exp] 169 / 2e-48 AT1G07010 467 / 2e-164 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031854 [exp] 94 / 1e-21 AT1G07010 290 / 3e-97 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031853 [exp] 54 / 5e-09 AT1G07010 87 / 7e-22 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127500 [exp] 436 / 2e-152 AT1G18480 538 / 0.0 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.009G077900 [exp] 155 / 2e-43 AT1G07010 538 / 0.0 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10014985 pacid=23152752 polypeptide=Lus10014985 locus=Lus10014985.g ID=Lus10014985.BGIv1.0 annot-version=v1.0 ATGGAGCCAGAGCTGTCAGATTCCTGCAAAGATCTCCCCAACCTCCTTTCATCCTTCGTCGACACCTTGATCGATTTCTCAGTCAGCGGCGGCCTGTTCC TACCACCCGAATCTGCCCCTCCTCCTCCCGCCACTCGCTACCCAGCTCCCAGCCGCCTCATCGCAATCGGAGATCTCCATGGTGACCTGGAAAAAACCAA ACAGGCATTCCGCCTCGCTGGTCTTATTGACGGCTCCGATCGCTGGTCCGGCGGATCCTCCACCGTCGTCCAGGTTGGCGACGTGTTCGATCGCGGCGGG GACGAGCTCAAGATCCTGTACTTTCTCGAGAAGCTAAAGAGAGAAGCCGCCAAGAGTGGCGGCGAGCTCATCACCATGAACGGAAATCATGAGATCATGA ACGTGGAAGCTGATTTCCGGTTCGTGACCCGATCGGGGCTGCAGGAGTTCGAGGATTGGGCGTTCTGGTACCGGATAGGTCAAAAGATGAAAAGCTTGTG CTCCAATTCGAATTCAATTTCAATTTCGAAATCAGATATCTTTGATTCGATTCCTTCATCGTTTCGCGGAGTGAAACAGGAAGCGGTTTCCGGAATCAGA TCGAGAATCGCCGCTCTACGCCCTGGCGGCCCTGTATCCACCAGATTCTTGACTAAGAACCAGACGGTGGTGGTCGTCGGAGACTCGGTGTTCGTACACG GCGGATTGCTATCCAATCACGTCGAATACGGATTGGAGAGGATCAACGACGAGGTGAGGGAATGGCTTAGCGGATCGACATCATCATCGTCATCATCAGC ACCGAGTTATTGCAAGGGAAGAGACGCGGTGGTGTGGCTGAGGAAGTTTTCAGAGGAAGCGCCGGAGAAATGTGACTGTTCAGCGCTTGAACATGTTCTT GCTACAATTCCTGGAGTGAAGAGGATGATAATGGGGCACACGATTCAGGAAGGAGGAATCAACGGGATATGCGAGAACAGGGCGATCAGGATCGATGTGG GATTGTCGAAAGGGTGCGGGAATGGGTTGCCGGAGGTGTTGGAGATCGACGGGACGAATTCTCAGGTAAGGATTCTGACGGCTAATCCTTTGTTTCGCGA GAAGAACAGTTACAAGGGTAGTATAGAGGATAGTAGTAGGTTACAGCAGCAGGTAGTTGAAGTAAAAGCTTGA
AA sequence Show only first row Show all	>Lus10014985 pacid=23152752 polypeptide=Lus10014985 locus=Lus10014985.g ID=Lus10014985.BGIv1.0 annot-version=v1.0 MEPELSDSCKDLPNLLSSFVDTLIDFSVSGGLFLPPESAPPPPATRYPAPSRLIAIGDLHGDLEKTKQAFRLAGLIDGSDRWSGGSSTVVQVGDVFDRGG DELKILYFLEKLKREAAKSGGELITMNGNHEIMNVEADFRFVTRSGLQEFEDWAFWYRIGQKMKSLCSNSNSISISKSDIFDSIPSSFRGVKQEAVSGIR SRIAALRPGGPVSTRFLTKNQTVVVVGDSVFVHGGLLSNHVEYGLERINDEVREWLSGSTSSSSSSAPSYCKGRDAVVWLRKFSEEAPEKCDCSALEHVL ATIPGVKRMIMGHTIQEGGINGICENRAIRIDVGLSKGCGNGLPEVLEIDGTNSQVRILTANPLFREKNSYKGSIEDSSRLQQQVVEVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10014985 [exp]	0	1
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10037596 [exp]	1.0	0.8787
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	6.0	0.8646
AT5G24010			Protein kinase superfamily pro...		Lus10039274 [exp]	8.2	0.8217
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	8.7	0.8655
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	8.9	0.8585
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	10.0	0.8381
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	10.9	0.8495
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	11.5	0.8348
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	14.7	0.8487
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	15.4	0.8319

Compare expression of checked genes

Lus10014985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.