Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25550 384 / 6e-138 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) AT4G29820 242 / 1e-81 CFIM-25, ATCFIM-25 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038867 [exp] 275 / 4e-94 AT4G25550 245 / 1e-82 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Lus10027624 [exp] 169 / 5e-53 AT4G29820 228 / 3e-76 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Lus10011944 [exp] 137 / 1e-40 AT4G29820 207 / 1e-67 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143300 [exp] 409 / 6e-148 AT4G25550 385 / 9e-139 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1) Potri.006G146400 [exp] 231 / 1e-77 AT4G29820 292 / 2e-101 ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, homolog of CFIM-25 (.1) Potri.012G140301 [exp] 223 / 1e-75 AT4G25550 208 / 5e-70 Cleavage/polyadenylation specificity factor, 25kDa subunit (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014987 pacid=23152750 polypeptide=Lus10014987 locus=Lus10014987.g ID=Lus10014987.BGIv1.0 annot-version=v1.0 ATGGTGGTGGGATCTGCGGTGGTGAATACGTACCCACTGTCGAGCTACACGTTCGGCACCAAGGAGCCCAAGATGGAGAAGGACACCTCCGTCGCCGATC GCCTCGCTCGCATGAAACTCAACTATATGAAAGAAGGGATGAGGACCAGCGTGGAAGCGATTCTTCTGGTTCAAGAACACAATCATCCTCACATACTTCT TCTCCAAATCGGAAACACATTCTGCAAGCTTCCAGGCGGCCGCTTGAAGCCAGGGGAAAACGAAATTGAAGGTCTGAAAAGAAAATTAACGAGCAAACTC GGAGCTAATTCGCCTACTCTTGTTCCTGATTGGCAGATTGGAGAGTGTGTAGCTACCTGGTGGAGGCCAAACTTTGAAACCACTATGTACCCTTATTGTC CACCGCACATAACTAAGCCCAAGGAATGTAAGAAGCTATATATAGTTCACTTGTCCGAAAGAGAGTACTTTGCAGTCCCGAAAAACTTGAAGCTCCTTGC TGTCCCGTTATTCGAACTCTACGACAACGTGCAGAGGTATGGTCCTGTGATTTCAACCATTCCTCAACAACTCTCGAGGTTCCAGTTCAACATGATCACC ACCTGA
AA sequence Show only first row Show all	>Lus10014987 pacid=23152750 polypeptide=Lus10014987 locus=Lus10014987.g ID=Lus10014987.BGIv1.0 annot-version=v1.0 MVVGSAVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKLNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL GANSPTLVPDWQIGECVATWWRPNFETTMYPYCPPHITKPKECKKLYIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMIT T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	0	1
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10026269 [exp]	2.6	0.8733
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	5.3	0.8627
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	8.4	0.8330
					Lus10029394 [exp]	8.7	0.8600
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	11.5	0.8119
AT5G10630			Translation elongation factor ...		Lus10026953 [exp]	14.6	0.7852
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10040281 [exp]	17.5	0.8195
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	20.2	0.8461
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10024811 [exp]	20.5	0.8115
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	23.3	0.7982

Compare expression of checked genes

Lus10014987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.