Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52240 194 / 3e-63 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT3G48890 193 / 5e-62 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT2G24940 101 / 7e-28 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT4G14965 75 / 3e-16 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038868 [exp] 279 / 5e-96 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 236 / 7e-79 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 236 / 8e-79 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038356 [exp] 144 / 2e-43 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10002241 [exp] 104 / 7e-29 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10029567 [exp] 108 / 2e-27 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10018026 [exp] 70 / 3e-14 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10034799 [exp] 62 / 9e-13 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1) Lus10042022 [exp] 60 / 1e-10 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G137800 [exp] 217 / 8e-72 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 216 / 2e-71 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G125100 [exp] 153 / 6e-47 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.018G016900 [exp] 107 / 4e-30 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.006G266200 [exp] 106 / 1e-29 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.016G022700 [exp] 68 / 1e-13 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10014988 pacid=23152815 polypeptide=Lus10014988 locus=Lus10014988.g ID=Lus10014988.BGIv1.0 annot-version=v1.0 ATGGCGGCTCAGCTATGGCAGACTGCACAGGAAGCAATCCTGACCTACACAGGACTAACCACCGCCACTTTCTTCACAGTCGTCGCCTTTGGTGTAGCTC TCTACTATCTGGTCTCCGGTATGTTCGGGTCATCGGATCCTCCGCCTAGACCCAGAAGCTTCGAGGAGCAAGTCGAGCCTCTCCCCCCTCCAGTTCAATT GGGTGAAATTAGCGAAGATGAGCTCAAACAATATGATGGGTCTGACCCTAACAAGCCCTTGCTCATGGCTATCAAGAGCCAGATCTACGACGTCTCCCAA AGCAGGATGTTCTACGGTCCTGGGGGGCCATACGCTTTATTTGCCGGAAAAGATGCTAGCAGAGCGCTGGCAAAGATGTCCTTCGAAGACAAGGACCTGA CTGGTGACATCTCGGGCCTCGGTCCATTCGAGCTGGACGCTCTACAAGACTGGGAGTACAAGTTCATGAGCAAGTATGTCAAAGTAGGTACTGTCAAGAA AGAAGAAGTCCCGGTAACCGATGGATCATCTAGCGAACAACCAGCAGCAGCTGAGAGTGCTGATGATGCTAAACCTGCGGCCGAAGCTGATGATCATAAT GCCAAGCCAGCTGAAGACGGTCCATCGGAGAACGAGTCGAAAGAGGAGTGA
AA sequence Show only first row Show all	>Lus10014988 pacid=23152815 polypeptide=Lus10014988 locus=Lus10014988.g ID=Lus10014988.BGIv1.0 annot-version=v1.0 MAAQLWQTAQEAILTYTGLTTATFFTVVAFGVALYYLVSGMFGSSDPPPRPRSFEEQVEPLPPPVQLGEISEDELKQYDGSDPNKPLLMAIKSQIYDVSQ SRMFYGPGGPYALFAGKDASRALAKMSFEDKDLTGDISGLGPFELDALQDWEYKFMSKYVKVGTVKKEEVPVTDGSSSEQPAAAESADDAKPAAEADDHN AKPAEDGPSENESKEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10014988 [exp]	0	1
AT1G70420			Protein of unknown function (D...		Lus10030876 [exp]	5.7	0.8412
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	7.1	0.7984
AT3G62550			Adenine nucleotide alpha hydro...		Lus10025033 [exp]	9.3	0.8462
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	14.1	0.7756
					Lus10028245 [exp]	16.9	0.7750
AT5G22390			Protein of unknown function (D...		Lus10020626 [exp]	20.1	0.8326
AT3G62550			Adenine nucleotide alpha hydro...		Lus10010013 [exp]	22.2	0.7272
AT5G01740			Nuclear transport factor 2 (NT...		Lus10017421 [exp]	23.9	0.7969
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10010765 [exp]	52.5	0.7764
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10034630 [exp]	59.7	0.7411

Compare expression of checked genes

Lus10014988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.