Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52230 84 / 8e-17 MBD13 methyl-CPG-binding domain protein 13 (.1.2) AT3G46580 54 / 3e-08 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G59380 51 / 5e-07 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038869 [exp] 961 / 0 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2) Lus10027447 [exp] 59 / 3e-09 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10005748 [exp] 54 / 7e-08 ND 36 / 0.009 Lus10005460 [exp] 46 / 2e-05 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10004963 [exp] 47 / 5e-05 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138300 [exp] 100 / 8e-22 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2) Potri.015G140100 [exp] 100 / 1e-21 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.001G240100 [exp] 43 / 0.0003 AT3G46580 117 / 7e-33 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G031100 [exp] 42 / 0.0004 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10014989 pacid=23152779 polypeptide=Lus10014989 locus=Lus10014989.g ID=Lus10014989.BGIv1.0 annot-version=v1.0 ATGGACGACTCGAGCCCCGACGACTGGCTGCCGGAAGGGTGGAGAGTTGAAGTCCATGTTCGGAAGAACGGTAGAAAGGATAAGTTGTATTTTCCTCCAA CCGGTGGAGCTAAATTCTTCTCTAAGCTCGAGGTGACTCGATATCTAAAACACATCAATTCCAGCAACAATGGTAACACTGACTCCAGTCCGGAAAATAA AAGCTGGAGCAGCAAGAACAGCACTAGAAGCTGCAATAACGTCGACCTCGTCGACAACACAGTCAATAATACTAAGATCAGCAGCAAGGCCGATACGACT GAAGGTATCCATAGTCACCATGCTGTCAGAAATACTAGTAGCAAATCAGTCAGTGTGATGGATGCTAATGACGTCACGGTCACCCCCACCTCCAAGAATA ACAGCATTACTGGAAGAAAAATCGCCGGTGTGGGTGACGCTAGCAACAATCTCAATGCCATCACCCCCACCTCCAAGAATCACAATGATGTAGAGGAGAG TACTCAGGTCACCAACAGTGAGGAGAAGGAAGAAAATAGCACTCCTAGAAAGTCTTCTAAAAAGGTAACCTTCGAGAAGGAAAAAGCTGAAGGGTTACCA CAAGGATGGACAAAGGAAGTCAAACTAACAAAAAAGGGCCGGAAAACCCGAAGAGATCCGTATTACACTGATCCTGAAGGTAACTACACGTTCCGCTCTT TGAGAGATGCTCTCCGGTACATCCAAACCGGGGAGCCTGGAAAACTAGCAATCAAGCGGAGGGAAGCTAGGAACGATGAAGATACAGAAGATGATCAAAC ACCAGCTTCATCCAAGAAACAGAAGCTGGGGACTGATGAGGTGGCAATTGGAACTGAAATAACTCCAGCATCAAAAGTCTTCCCAGATATGCCGGCAGTT GAACACGACAAGAGCTCAAAACCGTCGGAAGTAGTAGTAGTACCTCCGGTACAGGCAATGCAAGATGGGGAAACTGACCCGAGCCCGAGCTTAGAGGTGA TTGAAGTAACTCCAGAAGCTGAGGAAGAACACAGTACTGCCAAGTCCAAGAAGAAGAAGAAGAGAAACGTACAGCTTCCTCTCCGTTCCTCGAAGCGACT TGCTCGTGTTAAACTTTTGAGCGAGATGAATGCCACTGTCTCCCTCGATTCTGCTACTTCGGTTCTCGATACACAGCTTCACCGGAAAACTGTGAATCCA AATGAGGAGTCTTGTGAAGCAAGGAAACCGGCACCGAGTTCGAATAAGAGCGAGCAGCCTGTCGACAACTCCGCTCCAAACGAGATCGTTCTGATGGAAG AAAGCAGCAGCAAGAAACTTGCCGTGGAGACGCCTATCGACCTTCCCATTGGGGAGTTATGGGAAGATCCATGCATCGCATTTGCAATAAAAACCCTAAC CGGGTCACTTGACGAACCGGAGAACAACATGCCAGTAGGGCTGAACAATAACCGACTTGTCAATTCGGCCAATGAGAAGTCAAAAGGAACTACTATTCCT CCTCGAGAAAAGAAGAACCTTGCTGCTGCTGCTACAACATCGAATCGAAAACTCGAACCGGCTAATACCCCGCCACTCAACTTGTCTGCAGAGTATACAT GGGCGGATGACCCCTGCATCGAATTTGCTATCAAGACTCTAACCGGTGCAATCCCGCTTGATACCGATCTCGTCAAGCAGGACTTGAGACCGAATTCTTC TCCTGTCTTTCACCAGCCTACAGCAGTTTCGCCTCCACCGTCCATTGTGGACACGAAGAACGAGAGGCACCAGAGCAATAATAGCAGCGGTAGCATACCA TCTACGACAAAAAAACGAGTTACGAGGAGCCAGAGGAAGGCAATGTAG
AA sequence Show only first row Show all	>Lus10014989 pacid=23152779 polypeptide=Lus10014989 locus=Lus10014989.g ID=Lus10014989.BGIv1.0 annot-version=v1.0 MDDSSPDDWLPEGWRVEVHVRKNGRKDKLYFPPTGGAKFFSKLEVTRYLKHINSSNNGNTDSSPENKSWSSKNSTRSCNNVDLVDNTVNNTKISSKADTT EGIHSHHAVRNTSSKSVSVMDANDVTVTPTSKNNSITGRKIAGVGDASNNLNAITPTSKNHNDVEESTQVTNSEEKEENSTPRKSSKKVTFEKEKAEGLP QGWTKEVKLTKKGRKTRRDPYYTDPEGNYTFRSLRDALRYIQTGEPGKLAIKRREARNDEDTEDDQTPASSKKQKLGTDEVAIGTEITPASKVFPDMPAV EHDKSSKPSEVVVVPPVQAMQDGETDPSPSLEVIEVTPEAEEEHSTAKSKKKKKRNVQLPLRSSKRLARVKLLSEMNATVSLDSATSVLDTQLHRKTVNP NEESCEARKPAPSSNKSEQPVDNSAPNEIVLMEESSSKKLAVETPIDLPIGELWEDPCIAFAIKTLTGSLDEPENNMPVGLNNNRLVNSANEKSKGTTIP PREKKNLAAAATTSNRKLEPANTPPLNLSAEYTWADDPCIEFAIKTLTGAIPLDTDLVKQDLRPNSSPVFHQPTAVSPPPSIVDTKNERHQSNNSSGSIP STTKKRVTRSQRKAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10014989 [exp]	0	1
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Lus10038869 [exp]	1.0	0.8774
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10009688 [exp]	9.8	0.8456
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	23.4	0.8577
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	28.3	0.8512
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10042052 [exp]	37.1	0.8436
AT1G21090			Cupredoxin superfamily protein...		Lus10029783 [exp]	37.3	0.8311
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	41.8	0.8427
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	47.7	0.8333
AT4G39700			Heavy metal transport/detoxifi...		Lus10016812 [exp]	63.6	0.8224
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	66.5	0.8218

Compare expression of checked genes

Lus10014989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.