Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52220 89 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038870 [exp] 198 / 3e-66 AT5G52220 128 / 2e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140200 [exp] 104 / 2e-29 AT5G52220 112 / 2e-32 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09696 [flax] [poplar] Ctf8 Ctf8
Representative CDS sequence Show only first row Show all	>Lus10014990 pacid=23152772 polypeptide=Lus10014990 locus=Lus10014990.g ID=Lus10014990.BGIv1.0 annot-version=v1.0 ATGTTCCTTGCATTAAACGTTTCGGCGCAAGACCAGACCGCTGTGAGGTTGAACCGGTTGTGGTTGTCAATCGTCCAAGGGGGGAAACCGGATTCCATTT CCGCCAAAAACCCACAATATTGCCAACACAGGGCGTCGGTCGAAGTGCAGCCTTCGTTTCAGGACAAGATCCAGAACCTCGAAATCGGCCGTCTGTGCCG CCCTTCCTCCGACGACAAGTACACGCTCACGATCGGCTACCACGAGCTCTCCGGGGCGAAAGTCGCGTTGAAGAAGCCTCTAGCCGTGATGAAGAAGGTG AATCGGATCGACGCCGACGATGGGAAGGTGGAGCTCGACGTTGTAGGGATCATTCGACACAAGCTCCAGTTCAAAACCAGACCTAAGGCCCTAATCACCA AAACTGAGCCAGTGGTGAAGTATCGAGTCAAGAAAGCTGCGAGTTCTTCCGAGAGTTAA
AA sequence Show only first row Show all	>Lus10014990 pacid=23152772 polypeptide=Lus10014990 locus=Lus10014990.g ID=Lus10014990.BGIv1.0 annot-version=v1.0 MFLALNVSAQDQTAVRLNRLWLSIVQGGKPDSISAKNPQYCQHRASVEVQPSFQDKIQNLEIGRLCRPSSDDKYTLTIGYHELSGAKVALKKPLAVMKKV NRIDADDGKVELDVVGIIRHKLQFKTRPKALITKTEPVVKYRVKKAASSSES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52220			unknown protein		Lus10014990 [exp]	0	1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10039010 [exp]	5.7	0.7645
AT3G27030			unknown protein		Lus10012542 [exp]	11.6	0.7253
AT5G27430			Signal peptidase subunit (.1)		Lus10001092 [exp]	21.6	0.6708
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002601 [exp]	21.8	0.6666
					Lus10029164 [exp]	24.1	0.6641
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	27.6	0.7085
AT3G57030			Calcium-dependent phosphotries...		Lus10009651 [exp]	31.7	0.6959
AT4G17310			unknown protein		Lus10007477 [exp]	44.6	0.6472
AT1G18090			5'-3' exonuclease family prote...		Lus10038958 [exp]	52.3	0.6661
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10011988 [exp]	55.4	0.6121

Compare expression of checked genes

Lus10014990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.