Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52210 320 / 6e-113 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT1G70490 122 / 4e-35 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 122 / 4e-35 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 122 / 4e-35 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 122 / 4e-35 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G47170 122 / 7e-35 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 121 / 1e-34 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G24765 119 / 1e-33 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G15310 119 / 1e-33 ATARFB1A ADP-ribosylation factor B1A (.1) AT2G18390 117 / 5e-33 HAL, ARL2, TTN5, ATARLC1 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038871 [exp] 410 / 2e-146 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10005749 [exp] 384 / 4e-138 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10027446 [exp] 355 / 1e-126 AT5G52210 314 / 1e-110 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 124 / 1e-35 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 124 / 2e-35 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10030884 [exp] 122 / 6e-35 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 122 / 7e-34 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 125 / 1e-33 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10026383 [exp] 117 / 6e-33 AT2G18390 317 / 3e-112 TITAN 5, HALLIMASCH, ARF-LIKE 2, ADP-ribosylation factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138500 [exp] 347 / 3e-123 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.015G140400 [exp] 343 / 9e-122 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2) Potri.005G142100 [exp] 124 / 1e-35 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 122 / 3e-35 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 122 / 3e-35 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 122 / 3e-35 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 122 / 3e-35 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 122 / 3e-35 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 122 / 4e-35 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.010G152600 [exp] 120 / 1e-34 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10014991 pacid=23152812 polypeptide=Lus10014991 locus=Lus10014991.g ID=Lus10014991.BGIv1.0 annot-version=v1.0 ATGTTCTCCTTGTTCTATGGCCTTTACAAGCACATGTTCAGCAAGACAGAGTTTCATGTGCTAATTCTGGGGATCGATAAGGCCGGGAAAACAACCTTGC TCGAAAAGTTGAAGACAGTATACTCAAATTCAGAAGGCCTCCCACCTGATCGGATCGTCCCAACAGTTGGTCTCAACATTGCCCGCCTTGAAGTTTCGAA TTCCAAACTCGTGTTCTGGGACCTTGGTGGCCAGATTGGACTTCGCTCGATTTGGGAGAAGTACTACGAAGAAGCGCATGCTGTGATCTTCGTAATTGAT GCTGCTTCCCCTTCCCGTTTCGAAGATTCGAAATCTGCTCTAGAGAAATTGCTTAGGCACGATGATCTTCAAGGTGCCCCTCTTCTGATACTGGCAAACA AACAGGACCTTCCGGACGCTGTAACCACCGACGAACTGGGCAGATACTTGGACCTCAAGAAGCCGGACGAAAGAGTTTCTATGTGCGAAGCTGTTTCAGC TTACGACGGGTTGGGCATTAAAGGAAGCCTGGAATGGCTTGTCGAGTCAATGGAACGGAGTAAGAGAACCGAAACTCTGAGACTTCGTGCAGGAATGAAC GGTGCTAGCATCTAG
AA sequence Show only first row Show all	>Lus10014991 pacid=23152812 polypeptide=Lus10014991 locus=Lus10014991.g ID=Lus10014991.BGIv1.0 annot-version=v1.0 MFSLFYGLYKHMFSKTEFHVLILGIDKAGKTTLLEKLKTVYSNSEGLPPDRIVPTVGLNIARLEVSNSKLVFWDLGGQIGLRSIWEKYYEEAHAVIFVID AASPSRFEDSKSALEKLLRHDDLQGAPLLILANKQDLPDAVTTDELGRYLDLKKPDERVSMCEAVSAYDGLGIKGSLEWLVESMERSKRTETLRLRAGMN GASI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10014991 [exp]	0	1
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	7.2	0.8843
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	14.5	0.8859
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10037203 [exp]	27.5	0.8813
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	27.7	0.8735
AT4G08455			BTB/POZ domain-containing prot...		Lus10029732 [exp]	33.3	0.8740
AT4G29960			unknown protein		Lus10001629 [exp]	38.2	0.8646
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	42.5	0.8754
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035302 [exp]	48.1	0.8805
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	56.1	0.8675
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	57.0	0.8765

Compare expression of checked genes

Lus10014991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.