Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52200 105 / 1e-28 AtI-2 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038872 [exp] 287 / 6e-100 AT5G52200 118 / 3e-33 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10005751 [exp] 138 / 3e-41 AT5G52200 127 / 3e-37 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Lus10027444 [exp] 135 / 4e-40 AT5G52200 123 / 4e-35 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G140500 [exp] 147 / 2e-45 AT5G52200 123 / 9e-36 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2) Potri.012G138600 [exp] 137 / 3e-41 AT5G52200 137 / 2e-41 inhibitor-2, phosphoprotein phosphatase inhibitors (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04979 [flax] [poplar] IPP-2 Protein phosphatase inhibitor 2 (IPP-2)
Representative CDS sequence Show only first row Show all	>Lus10014992 pacid=23152758 polypeptide=Lus10014992 locus=Lus10014992.g ID=Lus10014992.BGIv1.0 annot-version=v1.0 ATGCAAGGAAATCAGATACCTGAAGTTGATCGTATGTGTTGTCAACTTGTTTACAGGGGGGAAAAACCGAGTGTAAGATGGAATGAAGACAATTTGGACG AGATTGAAGCAAATAAGCCCGTTAGGCAGAAAATCACTGAACCTAAGACTCCATATCACCCCATGATCGAAGATGACGACGACACTCCATCTCCTACCAA GGATGCCTTTGATGAATGTGTCGACGCAGTCCATGCTGACGAACTGCGTACGAAACTAGACACACTGGCCTCTTCTTCATCGGGTGGTGGGAACTCCAGC AGGCAACCCAATGGCTGGACATCATCCGAGGACGATGATGAGTCCGATCTTATGGACCAAGATGACGAAGATGCTGAAACAGACAGGAAAGCATGCTTCA GGGAGCATAGACGAGCCCATTACGACGAGTTTCGTACAGTGAAAGAACTCCGACGCCAGGGCTCGTACTACGAGGATGCCGAGGCTGAAGCCAATGGGCA TAAGAAGGAGACGAACGGCGACCACTCCGCACATCCTGCTAATGGATCGTCGTAG
AA sequence Show only first row Show all	>Lus10014992 pacid=23152758 polypeptide=Lus10014992 locus=Lus10014992.g ID=Lus10014992.BGIv1.0 annot-version=v1.0 MQGNQIPEVDRMCCQLVYRGEKPSVRWNEDNLDEIEANKPVRQKITEPKTPYHPMIEDDDDTPSPTKDAFDECVDAVHADELRTKLDTLASSSSGGGNSS RQPNGWTSSEDDDESDLMDQDDEDAETDRKACFREHRRAHYDEFRTVKELRRQGSYYEDAEAEANGHKKETNGDHSAHPANGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	0	1
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	10.6	0.8322
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	29.5	0.7486
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10025424 [exp]	33.6	0.7639
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10037829 [exp]	35.7	0.8305
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10028765 [exp]	40.1	0.7654
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	46.0	0.8176
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	61.7	0.8161
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	65.7	0.8113
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	73.8	0.7941
AT3G14460			LRR and NB-ARC domains-contain...		Lus10029705 [exp]	75.6	0.7673

Compare expression of checked genes

Lus10014992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.