Plant FIBer expression Database

Lus10014993 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52190 265 / 6e-91 Sugar isomerase (SIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038873
[exp]
235 / 7e-80 AT5G52190 163 / 1e-51 Sugar isomerase (SIS) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G140600
[exp]
286 / 3e-99 AT5G52190 283 / 6e-98 Sugar isomerase (SIS) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10014993 pacid=23152767 polypeptide=Lus10014993 locus=Lus10014993.g ID=Lus10014993.BGIv1.0 annot-version=v1.0
ATGGAACCTTCTCCCTCAACCTTCCACCAAGCCACCCAAATCTGCAACCAAATCGCCGCCGTCTTCTCCAACCCCACCGGAACCCACCCTCCGCCTCTAG
ACACCTTGGTCTCCACCGTTGCAGCTGCAGCGGCCCGGAACGGCAAAGTCTTCATTTACGGAGTCGGCCGAGAAGGCCTGATGCTGAAAGCACTCTGTAT
GCGTCTATCCCACTTGGGACTCTCCACCCACTTCGTGTTCGACATGACCACCCCTCCTATCTCCACCGGCGACCTCCTCGTGACATCCGCCGGCCCCGGA
GGCTTCTCCACGGTGGAAGCGCTCTGCTCCGTGGCGAGGGAAGCCGGTGGGGAGGTGCTGCTGCTGACTGCTCAGCCGGAGAAGGGGTCGTGTGTTAGGT
ATGCTAGTAAGGTTTGTTATGTGCCGGCGATGACTATGGCGGACGACGGCGACGATGGAGTGAGTGGTGGTGGTGGTCGGCGGTTGTTGTTGCCGATGGG
GAGTGTTTATGAAGGGGCGTTGTTTGTGTTGTTTGAGATGGCGGTTTATAAGCTGGGTGAGGTGTTGGGTCAGAGTTCTGTGGATATTAGAGCTCGACAT
ACTAATTTGGAGTGA
AA sequence
>Lus10014993 pacid=23152767 polypeptide=Lus10014993 locus=Lus10014993.g ID=Lus10014993.BGIv1.0 annot-version=v1.0
MEPSPSTFHQATQICNQIAAVFSNPTGTHPPPLDTLVSTVAAAAARNGKVFIYGVGREGLMLKALCMRLSHLGLSTHFVFDMTTPPISTGDLLVTSAGPG
GFSTVEALCSVAREAGGEVLLLTAQPEKGSCVRYASKVCYVPAMTMADDGDDGVSGGGGRRLLLPMGSVYEGALFVLFEMAVYKLGEVLGQSSVDIRARH
TNLE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G52190 Sugar isomerase (SIS) family p... Lus10014993
[exp]
0 1
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Lus10009876
[exp]
2.0 0.8781
AT3G09880 ATB' BETA, ATB'... Protein phosphatase 2A regulat... Lus10021511
[exp]
2.8 0.8844
AT4G16130 ATISA1, ARA1 arabinose kinase (.1) Lus10026983
[exp]
4.6 0.8874
AT5G67190 AP2_ERF DEAR2 DREB and EAR motif protein 2 (... Lus10018727
[exp]
8.9 0.8447
AT3G15358 unknown protein Lus10011176
[exp]
9.0 0.8642
AT2G15695 Protein of unknown function DU... Lus10014042
[exp]
9.2 0.8735
AT2G35800 SAMTL S-adenosyl methionine transpor... Lus10023493
[exp]
10.1 0.8794
AT5G54540 Uncharacterised conserved prot... Lus10003594
[exp]
11.0 0.8592
AT4G28570 Long-chain fatty alcohol dehyd... Lus10003621
[exp]
12.0 0.8033
AT5G49820 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein... Lus10038136
[exp]
12.0 0.8518

Lus10014993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.