Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62020 248 / 4e-81 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT4G11660 218 / 2e-68 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) AT1G46264 187 / 4e-57 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G36990 174 / 9e-53 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT2G41690 161 / 3e-48 HSF AT-HSFB3, HSFB3 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) AT1G32330 149 / 4e-41 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 147 / 1e-40 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G03720 142 / 2e-39 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G22830 142 / 3e-39 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 141 / 2e-38 HSF ATHSFA1E heat shock transcription factor A1E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038874 [exp] 363 / 3e-127 AT4G11660 192 / 4e-60 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10008007 [exp] 255 / 3e-83 AT4G11660 306 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10024508 [exp] 246 / 7e-79 AT4G11660 308 / 3e-102 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Lus10001133 [exp] 186 / 8e-56 AT1G46264 319 / 4e-107 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10019348 [exp] 175 / 4e-53 AT4G36990 254 / 3e-84 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10042646 [exp] 177 / 1e-52 AT1G46264 308 / 8e-103 SCHIZORIZA, heat shock transcription factor B4 (.1) Lus10009351 [exp] 171 / 3e-51 AT4G36990 248 / 1e-81 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10000312 [exp] 157 / 1e-44 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 155 / 9e-44 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G138900 [exp] 275 / 7e-92 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.015G141100 [exp] 259 / 7e-86 AT5G62020 233 / 8e-76 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.001G108100 [exp] 243 / 1e-78 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1) Potri.002G124800 [exp] 197 / 9e-61 AT1G46264 353 / 7e-121 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.007G043800 [exp] 188 / 5e-58 AT4G36990 241 / 3e-79 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Potri.014G027100 [exp] 189 / 2e-57 AT1G46264 335 / 9e-114 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.009G068000 [exp] 177 / 5e-54 AT1G46264 258 / 4e-85 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.001G273700 [exp] 175 / 3e-53 AT1G46264 251 / 2e-82 SCHIZORIZA, heat shock transcription factor B4 (.1) Potri.016G056500 [exp] 173 / 4e-53 AT2G41690 218 / 1e-71 HEAT SHOCK TRANSCRIPTION FACTOR B3, heat shock transcription factor B3 (.1) Potri.003G095000 [exp] 153 / 1e-42 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10014994 pacid=23152838 polypeptide=Lus10014994 locus=Lus10014994.g ID=Lus10014994.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCGATACCGGACCAAACCGGAGAGGCCGGCGGCGGAACTCCCCAGCTCGAATCTCAGAAATCCCTCCCGACTCCCTTCCTCACCAAGACCT ACCAGCTCGTTGACGACTCCACGATCGACGACGTCATCTCCTGGAACGACGACGGATCCAGCTTCGTCGTCTGGGACCCCACCATCTTCGCCAGAGACAT CCTCCCCAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAATTGAACACTTACGGATTCAGAAAACTAGTGCCTGATCGGTGGGAATTCACC AACGAATGCTTCCGCCGTGGGGAGCGGCGCCTCCTTTGCGACATACAGAGACGGAAGCTAGCTCCAGCTCCAGCTGCTGCGGCGGCAGCTGGATCTCAAT CGGTTTCTCCTGTTGCATCGACGCAGCCAGCAAAGCAGTTTTTGAGATCGCCTTCGAATTCGGGGGAAGAGCAGGTCGGATCGGCGACGTCAACATCACC GTCGCGATTCGGGACGGCGGCGGAGCAGCTGCTGGACGAGAACGAGAGGCTGCGGAGGGAGAACGCCCAGCTGAAGAAGGAGCTTGCCGAGATGAAGAGC CTCTGCAACAACATATTCTCCCTCGTCTCGAGCTACTCCTCCGCCTGTGGTAATAATACCCATCCCCCAGCGGCGACGGCGATGCTGGATCTGATGCCCC CGGCGAAGGAGGAAGGCACAAGCAGCAGCGGCGCGAGGATCTTTGGAGTGTCGATCGGGGAGAAAAAGAGAGGGAGGGAAGAAGGAGGAGGAGAGGACGA GGAGTCGACTGAGCTGCAGCTTCAGCCGCCGGGGAGTGAGGAGGTAGTGAAATCGGAGCCGGCGGAGTCGACGACGCCGTCGATGAAACAATGTCATAGA AGTAATCAGAGGGCGTGTAATTAA
AA sequence Show only first row Show all	>Lus10014994 pacid=23152838 polypeptide=Lus10014994 locus=Lus10014994.g ID=Lus10014994.BGIv1.0 annot-version=v1.0 MAPPIPDQTGEAGGGTPQLESQKSLPTPFLTKTYQLVDDSTIDDVISWNDDGSSFVVWDPTIFARDILPKHFKHNNFSSFVRQLNTYGFRKLVPDRWEFT NECFRRGERRLLCDIQRRKLAPAPAAAAAAGSQSVSPVASTQPAKQFLRSPSNSGEEQVGSATSTSPSRFGTAAEQLLDENERLRRENAQLKKELAEMKS LCNNIFSLVSSYSSACGNNTHPPAATAMLDLMPPAKEEGTSSSGARIFGVSIGEKKRGREEGGGEDEESTELQLQPPGSEEVVKSEPAESTTPSMKQCHR SNQRACN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014994 [exp]	0	1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	4.4	0.8592
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	4.7	0.8698
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	6.0	0.8936
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10024508 [exp]	9.2	0.8770
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	9.8	0.9016
AT1G48300			unknown protein		Lus10038034 [exp]	12.0	0.9047
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	12.7	0.8969
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10010963 [exp]	13.3	0.8315
AT4G13530			unknown protein		Lus10002932 [exp]	15.5	0.8785
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10033463 [exp]	18.0	0.8427

Compare expression of checked genes

Lus10014994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.