Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07280 1180 / 0 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 580 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 541 / 7e-171 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 530 / 1e-167 BRL3 BRI1-like 3 (.1) AT1G55610 528 / 1e-166 BRL1 BRI1 like (.1.2) AT2G01950 508 / 1e-159 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT5G48940 460 / 9e-142 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28650 421 / 1e-128 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G49660 407 / 6e-124 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 397 / 9e-120 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038875 [exp] 2074 / 0 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 554 / 1e-175 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033533 [exp] 488 / 2e-151 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038392 [exp] 488 / 2e-151 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10005784 [exp] 477 / 1e-147 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10023323 [exp] 472 / 7e-146 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 469 / 1e-144 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10017782 [exp] 447 / 2e-137 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011386 [exp] 448 / 2e-136 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G141200 [exp] 1384 / 0 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 1373 / 0 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G169600 [exp] 529 / 1e-166 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 526 / 2e-165 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.008G140500 [exp] 518 / 2e-163 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.010G101100 [exp] 516 / 7e-163 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.004G065400 [exp] 508 / 1e-159 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G078100 [exp] 484 / 5e-150 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 479 / 5e-149 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.002G258400 [exp] 468 / 7e-144 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014996 pacid=23152820 polypeptide=Lus10014996 locus=Lus10014996.g ID=Lus10014996.BGIv1.0 annot-version=v1.0 ATGGCGAAAATTCACACCTCTCTACTTCTCTCCATATTCTTCCTCTTCATAATCCACCAACCCATCACCGCCGTCTCAAACCCAGATCTCGAAACCCTCT CTTCCTTCAAAACCTCCTTCCAAACCCCAAAATCCCTCTCCTCATGGAACGATTCCACCCCTCTGTGCAGCTGGGTCGGCGTCACTTGCCGACTCGGCCG AGTTACCGCACTCTCACTCACCTCCGCCTCACTCTCCGGCCACATCCCCACTTCCCTCTCCTCCCTAACCCCCCTCTTTGAACCATCCCTGTCTCAAAAC CACCTCACCGGCGAAATCCCGCCGGTGATCGGTAATCTAACCACCCTCACCACTCTCGACCTCTCCGGAAACTCCCTCACTGGAAAAATCCCCCTTGAGA TCGGAAATTTAAAAAACCTCGTCACTCTCGACCTCTCCGGAAACTCGCTCGCCGGTGAAATCCCACCGGAGCTCGGCGGACTGAACGGTTTGAAGTTTCT AGACCTCAGCAGCAACCTCCTCTCTGGCTCCCTCCCCAGCGGAATTTTCCTCAAGCTTCATCAGCTGACATCTCTGGACATCACCAACAACTCGCTCACC GGCTCAATCCCTCCAGAAATAGGTAACCTCACGAACCTAATCGATCTCTACATCGGTTTCAACTCCTTCTCCGGCGTAATCCCGCCGGAGATCGGAAATT TAGTTCGCCTCCAGAGCTTTGTTTCTCCTCATTGTACGCTCGCCGGTCCTCTACCGGAGCAAATCTCGAATCTCACTTCATTAACAATGCTCGATCTCTC CTACAACCAATTACGCTGCGAAATCCCTAAATCAATCGGCGAGCTGAAGAATTTAACAATGCTGAATCTGGTCTATTCCGAGCTGAACGGAACAATCCCT AGAGAGTTGGGAAATTGCAAGAGCTTGAAGATTTTAACTTTGTCTTTCAACTCTCTGTCCGGAATTTTACCTGAAGAGCTCTCCGATTTGCCGCTGTTGA CATTTTCAGCGGAGAAGAATCACTTTTCCGGCCGTCTACCTTCCTGGATTTCGAAATGGGGCTTGATTACATCGATTCTGCTGTCCGGAAACCGGTTCGA AGGACCGATTTTGAAAGAGCTCGGAAACTGTTCTTCCTTGGAGCATATCAGTTTGAGTGATAATTTGCTGACAGGTGAGATTCCTGAAGAGCTCTGCGGT TCGGTTTCGATCAAGGAAATCTATCTGATGGGGAACTTGCTAACCGGTCGGATCGATAATGGAGTGTTTTCGAAGTGTATGAATTTGACTCAGCTTGTAT TGGATGACAACAAGCTGACCGGTAAGATTCCCGGTTACTTGGCTGATCTTCCTTTAATGCTTCTCGATCTCGATTCGAACGATTTCTCTGGTTCGATTCC CGTCAGGATTTGGAATTCCAGGACGTTGATGGAGTTCTCTGCTGGTAGGAACAGGCTTGAAGGTTCATTACCTGGAGAGATCGGAAACGCTGCCGTTTTG GAGACTTTGGTACTGAACAACAATCAATTAACTGGAGTTCTTCCTAAGGAGATAGGTAATCTTACATCTTTGACCTTACTGAACTTGAATTCGAATTATC TCGAAGGGAGTATTCCGTCCGAGATCGGAGAATGTAGGTCGTTAACCACCTTGGATTTAGGAAACAACAGCCTCACCGGTTCGATCCCTGACGAGCTAGC TGATTTGAGCCAGCTCCAGTGTTTGGTACTTTCTGATAACAGATTGTCAGGATCGATTCCGGATAGGGCTTCGTCATACTTTCGACAGGCGAATGTTCCG GACTTGGTCTACCTTCAGCACCGTGGCGTACTCGATCTGTCGAATAACATGCTGACCGGTACGATCCCGAGCGAGTTCGGTAAGCTTGTTATTGTGGTGG ATCTCTTGCTGCAGAACAACAGGCTCTCCGGGGAAATTCCGGCGAGTCTTTCCAAGCTGAAAAATCTCACCATGCTGGATCTCTCGTCGAATCGGCTGAC TGGTTCGATTCCGCCGCAGATCGGACGGTGTTCCACGCTGCAAGGGTTGTACATTGGTAACAATCATCTCCAAGGAACTGTTCCGGCTACATTGGGAGGA TTGAGCAGCCTTGTGAAACTGAACCTGACCGGTAACCAGCTGCACGGATCGGTTCCTTCGACTGTTTCGAATTTGAAGCAGCTGAGCCACATGGATATCA GCCACAACCGGTTGGAATCGGAGCTGCCTTCGAGTCTATCCGAGATGACGAATTTGGTAGGGCTGTTTCTTCAGGGAAACAGGATTTCAGGTTCTCTGGA TAAGGTTCTTTCAAATGCAACAAACTGGAGGGTTGAAAGAATGAATTTGAGTGACAATCTAATTGATGGAGCCATACCTTCTTCGATCGGGAATCTTTCG TTCCTGTCGGAATTGGATCTGTCAGGAAACAGCTTGACCGGAGAGATTCCTGTCCAGATGAGGAATCTTCTGCAGCTTGAGTATCTTGACCTGTCAGGAA ATAGACTAGATGGTCAGATTCCTGAAACTGTATGCAATCTGGTCAGCTTGATTCACCTCAACCTGTCAGGAAATGATCTCGATGGTCCCGTTCCGAGAAC AGGAATCTGCTCGAACCTGTCGGGATCTTCATTTTCATCATCATCGCCGTCACCATCAGCATCCTCACTCAAAGTTAGGCAGGTCTACGGTGTGGTGGTC GGGTTGGTAATCTTCAGCCTCGCGATGGCATTCTATCTACGAAGATGGTTCGTCGCTTCAGGTAACAAGCTGAAGGACGTCGAGGATATGAAGCTGAAGA GCCTGATGATCACCGACCGAAGCCTTTATTTCGTTCCCGACAGCAGATCGAAGGAGGAGCCACTGAGTATCAATGTGGCAATGTTCCAGCAGCCATTACT CAAAGTGACACTTAGCAACATCCTGGAAGGAACAAACAACTTCTCCAAGGCCAACATCATAGGAGACGGAGGATTCGGCACGGTCTACAAGGCGAATCTC GTCGCGAAAGGGGGAGATTCAATAGTGGTGGTAGCAGTGAAGAAGCTCAGCCAAGCAGCGTCGCAAGGGGACCGCGAATTCATGGCCGAAATGGAGACCA TAGGCAAAGTCAAGCACAAGAACTTGGTCTCACTCTTGGGATACTGCTCACTGGGTGAGGAAAAGGTTCTTGTCTATGAGTACTTAGTCAACGGCAGCTT GGACACGTGGCTCCGGAGCAACAATTCGAGTTTGACCCCGTTGGACTGGCCCACGAGGCTGAAGATTGCGGTGGGGTCAGCCCGCGGGCTGGCCTTCCTA CACCACGGGTTCACACCTCACATCATCCACCGTGACGTGAAGTCCAGCAACATCCTGCTGGACTCTGATTTCGAGGCCAAAGTCGCGGATTTTGGCCTCG CGAGGCTGATCAGCGCGTACGAGACCCACGTGAGCACCGAGGTGGCAGGGACGTTCGGGTACATCCCTCCCGAGTACGGGCAGAGCGGGAGGGCCACAAC GAAAGGCGACGTGTACAGTTTCGGCGTGATTCTTCTTGAGTTGGTCACCGGGAAGGAGCCCACGGGCCCCGATTTCAAGATGGTTGAAGGTGGGAACTTG GTGGGTTGGGTTTTGGGGAAGGTTAAGAAAGGTGCAGCCTTTGATGTTCTTGATAAGGATGTTGTTGTTAATGGAGAAGTTGGTAGCAGTATGAAGCAGG TTTTGCAGGTTGCTGTGGGTTGCTTGGCCGAGAAGCCTGCGAATCGGCCTACCATGCGTGATGTTCTCGAGTCTTTGAAGAGGATCAAAGGATGTTTGAA GTAA
AA sequence Show only first row Show all	>Lus10014996 pacid=23152820 polypeptide=Lus10014996 locus=Lus10014996.g ID=Lus10014996.BGIv1.0 annot-version=v1.0 MAKIHTSLLLSIFFLFIIHQPITAVSNPDLETLSSFKTSFQTPKSLSSWNDSTPLCSWVGVTCRLGRVTALSLTSASLSGHIPTSLSSLTPLFEPSLSQN HLTGEIPPVIGNLTTLTTLDLSGNSLTGKIPLEIGNLKNLVTLDLSGNSLAGEIPPELGGLNGLKFLDLSSNLLSGSLPSGIFLKLHQLTSLDITNNSLT GSIPPEIGNLTNLIDLYIGFNSFSGVIPPEIGNLVRLQSFVSPHCTLAGPLPEQISNLTSLTMLDLSYNQLRCEIPKSIGELKNLTMLNLVYSELNGTIP RELGNCKSLKILTLSFNSLSGILPEELSDLPLLTFSAEKNHFSGRLPSWISKWGLITSILLSGNRFEGPILKELGNCSSLEHISLSDNLLTGEIPEELCG SVSIKEIYLMGNLLTGRIDNGVFSKCMNLTQLVLDDNKLTGKIPGYLADLPLMLLDLDSNDFSGSIPVRIWNSRTLMEFSAGRNRLEGSLPGEIGNAAVL ETLVLNNNQLTGVLPKEIGNLTSLTLLNLNSNYLEGSIPSEIGECRSLTTLDLGNNSLTGSIPDELADLSQLQCLVLSDNRLSGSIPDRASSYFRQANVP DLVYLQHRGVLDLSNNMLTGTIPSEFGKLVIVVDLLLQNNRLSGEIPASLSKLKNLTMLDLSSNRLTGSIPPQIGRCSTLQGLYIGNNHLQGTVPATLGG LSSLVKLNLTGNQLHGSVPSTVSNLKQLSHMDISHNRLESELPSSLSEMTNLVGLFLQGNRISGSLDKVLSNATNWRVERMNLSDNLIDGAIPSSIGNLS FLSELDLSGNSLTGEIPVQMRNLLQLEYLDLSGNRLDGQIPETVCNLVSLIHLNLSGNDLDGPVPRTGICSNLSGSSFSSSSPSPSASSLKVRQVYGVVV GLVIFSLAMAFYLRRWFVASGNKLKDVEDMKLKSLMITDRSLYFVPDSRSKEEPLSINVAMFQQPLLKVTLSNILEGTNNFSKANIIGDGGFGTVYKANL VAKGGDSIVVVAVKKLSQAASQGDREFMAEMETIGKVKHKNLVSLLGYCSLGEEKVLVYEYLVNGSLDTWLRSNNSSLTPLDWPTRLKIAVGSARGLAFL HHGFTPHIIHRDVKSSNILLDSDFEAKVADFGLARLISAYETHVSTEVAGTFGYIPPEYGQSGRATTKGDVYSFGVILLELVTGKEPTGPDFKMVEGGNL VGWVLGKVKKGAAFDVLDKDVVVNGEVGSSMKQVLQVAVGCLAEKPANRPTMRDVLESLKRIKGCLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	0	1
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	2.2	0.9853
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10032528 [exp]	4.0	0.9672
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	5.1	0.9829
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	6.0	0.9728
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	6.5	0.9806
AT2G40010			Ribosomal protein L10 family p...		Lus10028276 [exp]	6.6	0.9791
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10011334 [exp]	7.1	0.9555
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	7.1	0.9788
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	7.7	0.9780
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	8.4	0.9772

Compare expression of checked genes

Lus10014996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.