Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G00730	546 / 0	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT3G61150	539 / 0	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
AT4G04890	515 / 5e-174	HD	PDF2	protodermal factor 2 (.1)
AT4G21750	501 / 2e-168	HD	ATML1	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
AT5G52170	478 / 2e-160	HD	HDG7	homeodomain GLABROUS 7 (.1)
AT1G05230	466 / 2e-155	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3.4)
AT1G17920	397 / 7e-129	HD	HDG12	homeodomain GLABROUS 12 (.1)
AT1G73360	386 / 3e-124	HD	ATHDG11, HDG11, EDT1	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
AT4G25530	384 / 9e-124	HD	HDG6, FWA	HOMEODOMAIN GLABROUS 6, FLOWERING WAGENINGEN (.1)
AT2G32370	375 / 3e-120	HD	HDG3	homeodomain GLABROUS 3 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10027437 [exp]	618 / 0	AT3G61150	715 / 0.0	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10005759 [exp]	607 / 0	AT3G61150	706 / 0.0	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10031933 [exp]	602 / 0	AT3G61150	410 / 1e-133	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10025940 [exp]	595 / 0	AT3G61150	504 / 1e-168	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10038877 [exp]	518 / 0	AT4G00730	261 / 6e-83	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10038876 [exp]	514 / 1e-179	AT3G61150	296 / 1e-93	HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
Lus10006765 [exp]	504 / 5e-170	AT4G21750	1152 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10020059 [exp]	496 / 4e-167	AT4G21750	1130 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Lus10036567 [exp]	489 / 3e-163	AT4G00730	979 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.014G075200 [exp]	567 / 0	AT4G00730	1045 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.015G141800 [exp]	565 / 0	AT4G00730	829 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.002G154700 [exp]	562 / 0	AT4G00730	1057 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.012G139300 [exp]	558 / 0	AT4G00730	838 / 0.0	ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.014G152000 [exp]	499 / 2e-167	AT1G05230	1179 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Potri.002G230200 [exp]	497 / 1e-166	AT1G05230	1159 / 0.0	homeodomain GLABROUS 2 (.1.2.3.4)
Potri.004G020400 [exp]	489 / 3e-164	AT4G04890	1185 / 0.0	protodermal factor 2 (.1)
Potri.011G025000 [exp]	476 / 4e-159	AT4G21750	1164 / 0.0	MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Potri.015G034100 [exp]	439 / 4e-145	AT1G73360	927 / 0.0	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)
Potri.012G038500 [exp]	412 / 1e-134	AT1G73360	920 / 0.0	ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0209 [flax] [poplar]	Bet_v_1_like	PF01852 [flax] [poplar]	START	START domain
CL0123 [flax] [poplar]	HTH	PF00046 [flax] [poplar]	Homeodomain	Homeodomain

Representative CDS sequence

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>Lus10014997 pacid=23152764 polypeptide=Lus10014997 locus=Lus10014997.g ID=Lus10014997.BGIv1.0 annot-version=v1.0

ATGGCCCAACAACCTACTAAGAAGAGGAAGTTCCATCGCCATACTCAGCTTCAGATAAACGAGCTCGAAAGTGTATTCCTAGAGTGTTCTCACCCAAACG

ACACAAAATATAACGAGCTTAGCAAGAAGCTCGGGATGGACATCCAGCAAGTAAAGTACTGGTTCCAGAACCGCCGCACTCTAAAAAAGACACAACTAAA

ACGTCACGAGAACACAGTTTTTCGAGAGGATAACGACAAGATTAAAGCGGAGAATTACCTCCTGCGAACACATATAGCCAACCCGATCTGCCACGACTGC

AGTGGCGTCGCTACGACCCCAACAACTCCAACGATCTCGTCCGAGCAGCAAAGATTGAGATTGGAGAACATCCGCCTCAAGGAAGAGATCAACCGCATTT

GCTCCTTAGCCAACAAGGAACTAGGTAGGAATTTATTCTCCTCCCCTCTGGCGTCAACATCGACGCCACCAATTGTCACTCCTCCGAGTTTCGATCCCAC

GATCGGCCAGAGCAACACGGTGGGAGGGTTCGATCTTGGTGTACTGCCTAATAGTACCACTAGCCACAGTAAGTCCATGTATAAAGAGTTTGCAGTCTTG

GCTATGGATGAGCTTATGACCATGGCTTGCACCGATGAGCCATTGTGGGTGAAGAAAATTGACGATCGTAGCCATTCGAGAGAGGTGCTTAATCTCGAGG

AGTACGGTCGAATTGCTGCACCTTCTCTCCTGAGGAAGCCGAATGGGCTCGCGAGGGAGGCGACGAGGGCGTCGGATATCGTTGTCATGGATGGCTCGAC

ACTTGTTGAGCTGTTGATGGATGTGAATCGCTGGACCGAGGCATTTACTGGAATGGTTGGCAAGGGCGCGACAATTGATGTGGTATCTCATGGGGTCAAT

GGAACAAAAGATGGTACTTTACAAACGATGCGAGCCGAGTTTCAAGCAATTTCGGCGATGATCCCCATACGTCATTCAAAGTTTCTCCGACTCTTCAAGA

AGCAATATGAGAATATTTGGGCTGTCATGGATCTCACGCTCGACCCGAAGCGGCCGGATGGGTCAAGTTTGAGCACGGAACCTTCGAGCATGAGACTCCC

TTCTGGGTGTGTCATAGAGGACTTGGGAAATGGTTGCTCTAAGGTGATATGGGTGGAGAATTGGTTGTACGATGAGAACTCGGTGAACCCTCTGATGCAA

CCTATGGTGAGATCGGGTGCGAGTTTCGGAGCTAAAAGGTGGATCGCCACTCTCCAGAGGTACTGCGAGTCGGTTGCGATTCTCATCGCTTCGGCTAACT

TGCCCCCGCACCCTTCGATTACGATAGCCGGGAAGAAGAGCTTGTTGAAGTTGTCCGAAAGGATGATCAACCTCTACTGCGGAGGAATCTCGGTTGGTTC

GTTTCCCTTGAAATGGGAGACAATCTCGGTGAATTCGAGTGATCACAACTTGAGGATCGCAATGAGAAAGAACTCGATCGAGCCAGGGGACACATTGGGA

GTTTCCTTGACCGCCTCGACTTCATTGTGGCTCCCCGTCTCGCGAAGGATGTTGTTCGAGTTCCTAGCGAATGGTGCGACGAGGAGTAATTGGGATGTTC

AGGCTAATGGGGGCACAATGACGGAGTTGGTTCATCTCCAGAAGACTCATATCCACAAGAACTCGATCTCTGTGCTTCGCACTTCGGGCTATGGTGGTGG

CAATGGGGGTTCATTGATCCTCCAAGAAACGTGGAACGACGAGTCATCGTCCGTGCTGGTGTACGCAACGGTGGACCCGCAATCGATGGAGCTGGTGATG

ACCGGAGGAGACAGCAGTTTCGTGGGTTTATTGCCATCGGGGTTCGCCATCTTCCCCGATGGCAGCGATGGTGTTGATGATGCTACCGGTGCCGGTACCA

GTACTGGTACTGGTATTGGTAGCGGTCGGGGATGCATCATGACAGTAGGACTTCAGCTACTAGTGAGCACTGTTCCGATGACGAGGGTGAGAAGGAAGTC

GATCGAGACTGTGAACAGCCTCCTCTCATCCACTATCCAACGTATCAAGAACGCCTTTCATATCGTGTGA

AA sequence

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>Lus10014997 pacid=23152764 polypeptide=Lus10014997 locus=Lus10014997.g ID=Lus10014997.BGIv1.0 annot-version=v1.0

MAQQPTKKRKFHRHTQLQINELESVFLECSHPNDTKYNELSKKLGMDIQQVKYWFQNRRTLKKTQLKRHENTVFREDNDKIKAENYLLRTHIANPICHDC

SGVATTPTTPTISSEQQRLRLENIRLKEEINRICSLANKELGRNLFSSPLASTSTPPIVTPPSFDPTIGQSNTVGGFDLGVLPNSTTSHSKSMYKEFAVL

AMDELMTMACTDEPLWVKKIDDRSHSREVLNLEEYGRIAAPSLLRKPNGLAREATRASDIVVMDGSTLVELLMDVNRWTEAFTGMVGKGATIDVVSHGVN

GTKDGTLQTMRAEFQAISAMIPIRHSKFLRLFKKQYENIWAVMDLTLDPKRPDGSSLSTEPSSMRLPSGCVIEDLGNGCSKVIWVENWLYDENSVNPLMQ

PMVRSGASFGAKRWIATLQRYCESVAILIASANLPPHPSITIAGKKSLLKLSERMINLYCGGISVGSFPLKWETISVNSSDHNLRIAMRKNSIEPGDTLG

VSLTASTSLWLPVSRRMLFEFLANGATRSNWDVQANGGTMTELVHLQKTHIHKNSISVLRTSGYGGGNGGSLILQETWNDESSSVLVYATVDPQSMELVM

TGGDSSFVGLLPSGFAIFPDGSDGVDDATGAGTSTGTGIGSGRGCIMTVGLQLLVSTVPMTRVRRKSIETVNSLLSSTIQRIKNAFHIV

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10014997 [exp]	0	1

Lus10014997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10014997 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10014997 coexpression network